PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RQF3U
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 375aa    MW: 43104.3 Da    PI: 8.1655
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RQF3UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092963312055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Aradu.RQF3U 296 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 331
                  5679*****************************885 PP
2ELK37.93.9e-13251272122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  Aradu.RQF3U 251 ELKNHLLRKYSGYLSSLKQELS 272
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.2E-23111155IPR005540KNOX1
PfamPF037901.8E-24112154IPR005540KNOX1
SMARTSM012561.4E-27164215IPR005541KNOX2
PfamPF037913.8E-24169213IPR005541KNOX2
SMARTSM011881100173193IPR005539ELK domain
PROSITE profilePS5121311.296251271IPR005539ELK domain
PfamPF037892.6E-10251272IPR005539ELK domain
SMARTSM011883.5E-7251272IPR005539ELK domain
PROSITE profilePS5007112.892271334IPR001356Homeobox domain
SuperFamilySSF466892.57E-19272347IPR009057Homeodomain-like
SMARTSM003894.7E-13273338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-27276337IPR009057Homeodomain-like
CDDcd000862.41E-11283335No hitNo description
PfamPF059201.1E-16291330IPR008422Homeobox KN domain
PROSITE patternPS000270309332IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEEYTNNSNN NQSPSSSSRA SFLYSSFGVG AATSSSIPHH LPINTFHLLH HHQSEAAAGS  60
DHCFQSHQVP SVKTEPRNSS QQIFNYPLMR PNDLHHSSDQ GGTQNSNDDV EAIKAKIIAH  120
PHYSNLLQAY MDCQKVGAPP EVVARLSAAR QEFEARQRSM VGSTREACGK DPELDQFMEA  180
YYDMLVKYRE ELSRPIQEAM DFMRRIETQL NMLSNGPLRI FSEKQVTSSN TNTLDAVPIT  240
HFPKNTVEDR ELKNHLLRKY SGYLSSLKQE LSKKKKKGKL PKDARQKLLT WWELHYKWPY  300
PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF MVMDGLHPHN NHQNASPLYM  360
DSHYVMPDGH YRLPP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RQF3U
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935086.10.0homeobox protein knotted-1-like 2
SwissprotO041351e-145KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A445BUE40.0A0A445BUE4_ARAHY; Uncharacterized protein
STRINGGLYMA14G10430.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-121KNOTTED-like from Arabidopsis thaliana