PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RC5BB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 369aa MW: 41095.4 Da PI: 9.9228 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.9 | 1.1e-15 | 204 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Aradu.RC5BB 204 VHNQSERRRRDRINQKMKALQRLVPNA-----NKTDKASMLDEVIKYLKQLQ 250 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-18 | 198 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.276 | 200 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-13 | 204 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-17 | 204 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.37E-15 | 205 | 254 | No hit | No description |
SMART | SM00353 | 3.1E-16 | 206 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MANNYDEIAE LTWENGQISM HGLSGLDPTS QKKPTWVNRA HDTLESIVQQ ATCKNKKSKL 60 TIKDNHAYVD VPTTTSSIVA SSGEHHQMVP TLSRKRSHSS YSDQQQHRRD VNYVSINNTN 120 RKCGVATASV TFCRDNNDVT TMMTWPSLDS GPRSLKNDKI LEEDSACQSG SEVRNNENDR 180 DGGKGETGQS KSSSVVRRNR TAAVHNQSER RRRDRINQKM KALQRLVPNA NKTDKASMLD 240 EVIKYLKQLQ AQIEMMMSVS MPQMIMQQQL QMSMLARSMA NNAPNPIRPL FPQLIQPTTT 300 IGAANTASAP MFLAPSLMIP SSTNASIPLP SASYGAATFA QPLNMDMLNN MAAFYSQQMN 360 HHQNNQIKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 213 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00571 | DAP | Transfer from AT5G61270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RC5BB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937893.1 | 0.0 | transcription factor PIF7 isoform X1 | ||||
TrEMBL | A0A445C292 | 0.0 | A0A445C292_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G21495.1 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12999 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 7e-36 | bHLH family protein |