PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.RA03Y

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 570aa MW: 65530 Da PI: 7.7842

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.RA03Y	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.8	8.6e-19	83	172	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fY +YAk++GF +++++++ k+++ +++ + C++eg+re++ k+ + r++ t t Cka++ v +++ ++ w+v+++el H+H++ Aradu.RA03Y 83 EFYASYAKKLGFVTKVRNTNFDkmrKDTKIPINQSLHCTREGYRESRVKA---ATRSNRITATRCKARMYVMLDReNECWVVSRVELRHSHPC 172 6*********998888776655455666699**********999...899999**********9999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-16	83	173	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.322	353	391	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0037	366	393	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MERSNPEGEP NSTVINASEG NDELNDDGVV NQEGSLVDEI TDVMMTRNDE LDLRHELPDH 60 SGLGEEEIPA IGMRFDSLHL AHEFYASYAK KLGFVTKVRN TNFDKMRKDT KIPINQSLHC 120 TREGYRESRV KAATRSNRIT ATRCKARMYV MLDRENECWV VSRVELRHSH PCSADKAVHY 180 HEYPELTMHA KCVITDNDEA GIRPNKTYLA LANEVDLYAN RRKWVPIFFK SEFWAGMRST 240 QRSESMHAFY GGYLHCKSGL VQFVHEYDNV LGNKEQKELE DDAADSKGVI PCIGSTGIER 300 QFQQEYTSNM FRNLQLEVRK KTDCVVRSTE QKGDTISIKV DEQKVFWGKP VYHTFIIQFD 360 PLSRKSRCEC NKFESVGILC CHILAIWSYY RVDTVSSCYV LPRWSKNVIR KHTYIKSSHD 420 VARSNESHNL FRNLCSEFYN VAQEFVACEE EAAILRAVLL DAKSKLTDHR ASMRSCTLDG 480 TQNRMLTRST WTLKVKTKGR PKGKRLGAEL DKSIKKSMEK RKRKSQPDVV DLQTDNDCQG 540 SVDNRFEDST IWNSADGGGF MDLLNSFRHL

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MERSNPEGEP NSTVINASEG NDELNDDGVV NQEGSLVDEI TDVMMTRNDE LDLRHELPDH  60
SGLGEEEIPA IGMRFDSLHL AHEFYASYAK KLGFVTKVRN TNFDKMRKDT KIPINQSLHC  120
TREGYRESRV KAATRSNRIT ATRCKARMYV MLDRENECWV VSRVELRHSH PCSADKAVHY  180
HEYPELTMHA KCVITDNDEA GIRPNKTYLA LANEVDLYAN RRKWVPIFFK SEFWAGMRST  240
QRSESMHAFY GGYLHCKSGL VQFVHEYDNV LGNKEQKELE DDAADSKGVI PCIGSTGIER  300
QFQQEYTSNM FRNLQLEVRK KTDCVVRSTE QKGDTISIKV DEQKVFWGKP VYHTFIIQFD  360
PLSRKSRCEC NKFESVGILC CHILAIWSYY RVDTVSSCYV LPRWSKNVIR KHTYIKSSHD  420
VARSNESHNL FRNLCSEFYN VAQEFVACEE EAAILRAVLL DAKSKLTDHR ASMRSCTLDG  480
TQNRMLTRST WTLKVKTKGR PKGKRLGAEL DKSIKKSMEK RKRKSQPDVV DLQTDNDCQG  540
SVDNRFEDST IWNSADGGGF MDLLNSFRHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.RA03Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016206358.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025661319.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444YMA1	0.0	A0A444YMA1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23343	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-27	FAR1-related sequence 5