PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.R95HC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 451aa    MW: 51317.1 Da    PI: 6.5913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.R95HCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.54.3e-92584461374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+ A+av+ +++++a + L+ l + +s +gd+++R++ayf  +L arl+   s  y+ +  ++ts    +ee+ a++ ++ vsP+++f+h+ta
  Aradu.R95HC  58 LIHLLLSTATAVDGNNFAAALNNLTDLYQSVSLTGDSVERVVAYFSDGLTARLLTRNSPFYDMIMEEPTS----EEEFRAFTDLYRVSPYFQFAHFTA 151
                  689****************************************************9*****999888885....789999999*************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaIlea+e+e     + +H+iDfd+s+G+QWp+L+q+L++++   +   lR+Tg+g+    + +el+et++rL +f + + ++ fef+ l    l  
  Aradu.R95HC 152 NQAILEAFEREedrnnRSIHVIDFDVSYGFQWPSLIQSLSEKAtsTSRIFLRVTGFGK----NLKELQETESRLVSFSKGFsNLVFEFQGL----LRG 241
                  *********9988887899***********************95344459********....99***************8758*******8....777 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                   ++ +Lr k++E++aVnlv  l +l     + ++ ++++L +v slsP +vv+veqe ++  + +Fl rf+++l+y++a+fdsl+  lp es er  +
  Aradu.R95HC 242 SRVINLRKKKNETVAVNLVSYLNTLS----CFTK-ISDTLGFVHSLSPSIVVLVEQEGSRtPTRTFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRI 334
                  78899***************999997....4444.678*******************9997999********************************** PP

         GRAS 286 Erellgreivnvvacegaerr...erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..................sgslv.l 360
                  E++llg+ei+n++ + +++ +   ++ e++e W++r+e+ GF   ++s+ka+ qaklll++      ++ eee                  +g +v l
  Aradu.R95HC 335 EKKLLGKEIKNMLNNYENNNIgdcAKYERMEAWKARMENHGFVGNKISSKAMIQAKLLLKMRThYCPMQFEEEddsdgggggggfrvserdEGRAVsL 432
                  **************99888652226789999****************************99875555777766678888888888888888777777* PP

         GRAS 361 gWkdrpLvsvSaWr 374
                  gW++r L++vSaW+
  Aradu.R95HC 433 GWQNRFLLTVSAWQ 446
                  *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.28332406IPR005202Transcription factor GRAS
PfamPF035141.5E-8958446IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMMMSCSSST TFDHEAYEAK IFRLLQMRDQ MLRQHHRNHD NTNKGLLGNN NTNNGLPLIH  60
LLLSTATAVD GNNFAAALNN LTDLYQSVSL TGDSVERVVA YFSDGLTARL LTRNSPFYDM  120
IMEEPTSEEE FRAFTDLYRV SPYFQFAHFT ANQAILEAFE REEDRNNRSI HVIDFDVSYG  180
FQWPSLIQSL SEKATSTSRI FLRVTGFGKN LKELQETESR LVSFSKGFSN LVFEFQGLLR  240
GSRVINLRKK KNETVAVNLV SYLNTLSCFT KISDTLGFVH SLSPSIVVLV EQEGSRTPTR  300
TFLSRFTDSL HYFAAMFDSL DDCLPLESAE RLRIEKKLLG KEIKNMLNNY ENNNIGDCAK  360
YERMEAWKAR MENHGFVGNK ISSKAMIQAK LLLKMRTHYC PMQFEEEDDS DGGGGGGGFR  420
VSERDEGRAV SLGWQNRFLL TVSAWQPLSL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-566644927382Protein SCARECROW
5b3h_A8e-566644926381Protein SCARECROW
5b3h_D8e-566644926381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.R95HC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942394.10.0scarecrow-like protein 18
TrEMBLA0A444XSY70.0A0A444XSY7_ARAHY; Uncharacterized protein
STRINGXP_004496354.10.0(Cicer arietinum)
STRINGGLYMA10G35920.20.0(Glycine max)
STRINGGLYMA20G31680.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.17e-55GRAS family protein