PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.R53MC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 273aa MW: 30854.2 Da PI: 9.4272

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.R53MC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.5	2e-12	179	271	4	97
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +l++s+ ++ l+lp +fa++ + + +++ +g +++ l++++++++ ++lt+GWk+ +++ng +g ++ F+++ +e+++ v+v+ Aradu.R53MC 179 KLLTSNQVDNSYLILPLRFAQNAFPSRYN--NVKVILYNGCCYRLGLRWNNSRKGqVYLTRGWKSLARDNGFSSGTVLKFHVSPADETTMPVQVL 271 455666777777******555433233..56666666*****97776667***********************87667777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-13	175	271	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.18	176	273	IPR003340	B3 DNA binding domain
CDD	cd10017	1.42E-9	177	272	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.2E-11	177	272	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0021	177	266	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-9	179	270	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MYVGEDVFVV MKVKDSFMAT KELSYPSPKL ASNYYHVTHE STSRAYHIAT TPQTASFDYP 60 SEIKTSSNET YCLDHYQKHG YLNQPPLPDE TLPTGELRNG SVILPTRIFN NLSQAQTSPL 120 PAGYVSLEEK VILNNPTSLL VKRQRSSPQN ADETNIPPPV MPAPIIPTTR SYRMYTCMKL 180 LTSNQVDNSY LILPLRFAQN AFPSRYNNVK VILYNGCCYR LGLRWNNSRK GQVYLTRGWK 240 SLARDNGFSS GTVLKFHVSP ADETTMPVQV LKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.R53MC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015940715.1	0.0	uncharacterized protein LOC107466241