PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.R0U9B
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 489aa    MW: 55165.8 Da    PI: 5.0994
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.R0U9BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-35301212101
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+y++++d+++++++sw+ +++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i
   Aradu.R0U9B  30 FLLKTYDMVDDSATDDIVSWNsSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPER---------WEFANDDFIKDQKHLLKNI 117
                   9********************8889*****************************************999.........******************* PP

                   XXXX CS
  HSF_DNA-bind  98 krkk 101
                   +r+k
   Aradu.R0U9B 118 HRRK 121
                   **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3626120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5826120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.54E-3426120IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2930120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
EGEDFLEGSG MEGGAPQSTG GGAGGGPAPF LLKTYDMVDD SATDDIVSWN SSTNNSFVVW  60
NPPEFARLLL PTYFKHNNFS SFIRQLNTYG FHKIHPERWE FANDDFIKDQ KHLLKNIHRR  120
KPIHSHSHPP GSVVDPERAA FEEEIEKLNR EKSSIESNIF SFKQHQSTAK IHLEDFQQRL  180
DGMEKRQKHL LNIFEKALQN PTFVEQLSQK IESIDLSAYN KKRRLPQVDD MQPVVESSFV  240
DNPNNFRMEF GNVFHQDFSN KLRLELSQAV SDMNLVSRST QSSNEHGESP QKKISEGEQT  300
GIQTRTSVPF APETLELADT GASFTFKMDS CLSQRATYAE SPKLCSLEPS SEEGDSHISC  360
QLTLASCPFK VNRNSYSAKA LQIDTQEIGK LAEPRFHSNS KESDSGVFSN RNQANDATNL  420
ASSLETPSNN QVTQPNRVND VFWEQFLTER PGCSDNEEAI SNYRGNPCDE QDEGRLNARN  480
VKNMDQLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2081204129Heat shock factor protein 1
5d5v_B3e-2081204129Heat shock factor protein 1
5d5v_D3e-2081204129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.R0U9B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015958229.10.0heat stress transcription factor A-5-like
SwissprotQ94BZ51e-159HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A445AB170.0A0A445AB17_ARAHY; Uncharacterized protein
STRINGGLYMA05G28460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-162HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]