PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.R0TBT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10693.9 Da PI: 8.9427 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 6e-08 | 8 | 55 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g+W++ + + + +a + + ++ +W+ +a+ +g g+t+ ++k ++ Aradu.R0TBT 8 GSWSAKDNKAFERALAVYDKDtpdRWNNVANAVGGGKTPDDVKTHYEL 55 89*******************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.583 | 5 | 61 | IPR017884 | SANT domain |
SMART | SM00717 | 8.7E-8 | 6 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-4 | 7 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-6 | 8 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-12 | 8 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-5 | 9 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASMSASGSW SAKDNKAFER ALAVYDKDTP DRWNNVANAV GGGKTPDDVK THYELLLRDI 60 KFIESGQVPF PYNKNLNPTS QQEHDNNRLK NLKLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-34 | 1 | 94 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.R0TBT |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946388.1 | 7e-66 | transcription factor RADIALIS-like | ||||
Refseq | XP_025624374.1 | 7e-66 | transcription factor RADIALIS | ||||
Swissprot | Q58FS3 | 1e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A445B2F1 | 1e-59 | A0A445B2F1_ARAHY; Uncharacterized protein | ||||
STRING | AES68669 | 1e-42 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-27 | RAD-like 6 |
Publications ? help Back to Top | |||
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