PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QZ653
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 285aa    MW: 32176.2 Da    PI: 10.5826
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QZ653genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-31105154150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                  krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Aradu.QZ653 105 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 154
                  79***********************************************8 PP
2K-box106.53.2e-351752669100
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + +a + + qqe++kL+++i+nLq+++R++lGe+L+s+++++L++Le++Lek+++kiRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  Aradu.QZ653 175 AGSASEINAQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLENKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 266
                  556667799********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4297156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.13297157IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-3398169IPR002100Transcription factor, MADS-box
CDDcd002652.04E-4298167No hitNo description
PROSITE patternPS00350099153IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-3399119IPR002100Transcription factor, MADS-box
PfamPF003191.2E-26106153IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-33119134IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-33134155IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.603180270IPR002487Transcription factor, K-box
PfamPF014861.1E-26181264IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTFVNKLSPS SSSSKNKQAK KDQSQKKIKG KSSEPLLCLN LFFPNTNTIW KLIKTRIFLH  60
IVEKIFVIFQ GIGEIKKMAF PGANESMSGA SSPQRKMGRG KIEIKRIENT TNRQVTFCKR  120
RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYANNSVKA TIDRYKKACS DSSGAGSASE  180
INAQQEAEKL RAQISNLQNN NRQILGESLS SMNVRDLKNL ENKLEKGISK IRSKKNELLF  240
AEIEYMQKRE IDLHNNNQLL RAKIAESERN NMIDVIVIVI VTLAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2097165169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2097165169Myocyte-specific enhancer factor 2B
1tqe_R1e-2097165169Myocyte-specific enhancer factor 2B
1tqe_S1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_A1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_B1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_C1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_D1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_E1e-2097165169Myocyte-specific enhancer factor 2B
6c9l_F1e-2097165169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QZ653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7605791e-164KT760579.1 Thermopsis turcica floral homeotic protein AGAMOUS mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025621759.11e-138floral homeotic protein AGAMOUS
SwissprotQ435851e-108AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A445BC771e-131A0A445BC77_ARAHY; Uncharacterized protein
STRINGXP_004485952.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.12e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]