PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QL7HW
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family E2F/DP
Protein Properties Length: 316aa    MW: 34652.9 Da    PI: 7.6314
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QL7HWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.15.4e-2798180271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 +kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Aradu.QL7HW  98 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsdlspdqqqyYEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 180
                  689********...*****999******************************9899*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-4593186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-3397180IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-2499180IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-21100181IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.17E-22185255IPR014889Transcription factor DP, C-terminal
SMARTSM011384.8E-33187314IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.06E-22187268No hitNo description
PfamPF087815.4E-16216268IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
QLRSTNPTPS PSFRSVHFSS PSASPPPPPT TTLVFELAKS IGQSGSTSKS AGLATPAGDS  60
TCLKLDHLDI QGDDAGSQGP VGSKKKKRGQ RAVGPDKSGR GLRQFSMKVC EKVESKGRTT  120
YNEVADELVA EFADPGNSDL SPDQQQYYEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG  180
LPRTSVNDIE ELKSERLVLR SKIEKKTAYL HELEEQTRPH ATVEVEISED MQLVHFDFNS  240
TPFELHDDNY VLKAMKFCGR PQSDNTTHNL ADGGEGSSMS GLNQSQVPPS VTNLPARPPT  300
SPPLPGILKA RVKNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3491185193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QL7HW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952827.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-117DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445E2D90.0A0A445E2D9_ARAHY; Uncharacterized protein
STRINGXP_004505605.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-120Transcription factor DP