PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.QAB91 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 10357.8 Da PI: 6.7924 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.8e-09 | 16 | 57 | 14 | 55 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++iN+ ++L+ llP++ + ++ K s + iL++++ +I+ Lq Aradu.QAB91 16 NEINDLVSRLQVLLPHLNQRTNSKHSLSKILQETCSHIRRLQ 57 58**************879**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.064 | 2 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-6 | 16 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-8 | 16 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-9 | 17 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MSGQRSSTTG LKLTENEIND LVSRLQVLLP HLNQRTNSKH SLSKILQETC SHIRRLQKEV 60 DDLGERLALL MDSMDISDVD RRVLENFLQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.QAB91 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027351279.1 | 6e-40 | transcription factor PRE4-like | ||||
TrEMBL | A0A445DGN4 | 7e-57 | A0A445DGN4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G47171.1 | 4e-39 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10624 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47710.1 | 8e-19 | BANQUO 3 |