PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QA920
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 340aa    MW: 40736.2 Da    PI: 9.7485
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QA920genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345e-11895196
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 ffkvl    ++k+  l +pk f++e+  g++ +   ++l+ ++  + +v+  ++k+ g+++l++GW + vk+ gL+   f++F ++g s+f   vk+
  Aradu.QA920  8 FFKVL--VQSFKHE-LKIPKVFVKEYwRGVS-N--PIVLKLPNTLKQRVYW-IQKNEGEIWLEEGWDQVVKDFGLEYSQFLTFDYKGWSCF--EVKI 95
                 78888..5566665.99*********95562.3..4999999999999999.5999999**************************987999..4544 PP
2B352.87e-17246336395
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  k+ +++++ +s+++ +p +fa++h   +e+++ +++ +   r W+v ++ ++++ r   + l++GW +F ++n+L++gD++vF+l+++  +++ v+
  Aradu.QA920 246 KIRIQESYVESRCVAIPATFARKHL--EEGPIRMIVGN---RAWTVCYKTWRGRARyrkHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMIVR 336
                  6666666667777***********5..34665666555...99999998877777667799***********************998744445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.487599IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12696IPR015300DNA-binding pseudobarrel domain
CDDcd100178.26E-9897No hitNo description
SuperFamilySSF1019362.55E-148105IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-9895IPR003340B3 DNA binding domain
SMARTSM010191.4E-9899IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-8108202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.161110203IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-8110203IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.094112203IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-16239328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17240338IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-14243337No hitNo description
PROSITE profilePS5086310.729244340IPR003340B3 DNA binding domain
PfamPF023623.4E-14245337IPR003340B3 DNA binding domain
SMARTSM010193.1E-8245338IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MPLHERGFFK VLVQSFKHEL KIPKVFVKEY WRGVSNPIVL KLPNTLKQRV YWIQKNEGEI  60
WLEEGWDQVV KDFGLEYSQF LTFDYKGWSC FEVKIYPMKD SEIMPPHHQI CFFQILAHNK  120
FYQKLMIPKC ANEYWKRMSN PIKLVLPCGS VERKVMWTKR GENIWLEQGW EKVVELCGLS  180
YEWLLTFDYN GRSSFEVKVY DTTGLRVAYY NFDEYDVENN KDFVQEHFKR KKINTVNGSN  240
RNPSFKIRIQ ESYVESRCVA IPATFARKHL EEGPIRMIVG NRAWTVCYKT WRGRARYRKH  300
KLQSGWLRFR RENNLEVGDV CVFELISKFP QTMIVRVQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QA920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946663.20.0B3 domain-containing protein At5g18090-like
TrEMBLA0A445B0U90.0A0A445B0U9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3004022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein