PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q6TEP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 482aa    MW: 56143.4 Da    PI: 10.7893
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q6TEPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-1621112198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvf 97 
                  ffk+ ++++   ++ ++lpkkf++++g+    s  l l+ ++g +W+v    +++ gr+++++GWkeFv    L+ g ++ F+++ g  + +  v +f
  Aradu.Q6TEP  21 FFKIIVRESLQDEN-FMLPKKFTRKYGSG--LSNPLYLKPPDGTEWRVDW--TNRNGRTLFKRGWKEFVAYYSLDHGHVLWFEYNiG--TSHIEVEIF 111
                  88999888888887.***********755..6667***************..9999***************************9733..444577776 PP

                  - CS
           B3  98 r 98 
                  +
  Aradu.Q6TEP 112 D 112
                  5 PP
2B342.51.1e-132783571799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++ kf++++ ++++++  +++     + + vkliyr +s+  ++++GW+ F++a +L++gD+++Fkl++r++  l v+++r+
  Aradu.Q6TEP 278 YFSTKFFRKYFENNPQNANIRFG---KKLFPVKLIYRPSSCNAFISAGWNFFARASKLQAGDVCLFKLVNRKDPVLDVHICRR 357
                  67789999996666777777754...499****************************************999999******98 PP
3B350.53.8e-163974801299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++r  l+  f +++ +k++++  ++l+    + W v++iy+ +s+ +++++GW++F++a +L++gD++vF+l+++++  ++v+++r 
  Aradu.Q6TEP 397 RRSRPNLSAIFYRKYFKKNQQN--VKLQ-FGKEMWPVTIIYNPSSRNTFISAGWSSFARASKLETGDVCVFELINEKDL-FNVHICRV 480
                  4556778888999997665555..5543.35589****************************************97444.6****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2014115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-1917121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.73120114IPR003340B3 DNA binding domain
CDDcd100173.28E-1420112No hitNo description
PfamPF023625.5E-1321112IPR003340B3 DNA binding domain
SMARTSM010191.8E-1121114IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-12257357IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-14259357IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-4263358IPR003340B3 DNA binding domain
PfamPF023625.2E-12277358IPR003340B3 DNA binding domain
CDDcd100174.70E-10278356No hitNo description
PROSITE profilePS508639.361304358IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-20379480IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-18380480IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-15385479No hitNo description
SMARTSM010192.0E-13387481IPR003340B3 DNA binding domain
PfamPF023624.2E-14401480IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279428481IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MAPSNYQQNK HSPSSSTVIR FFKIIVRESL QDENFMLPKK FTRKYGSGLS NPLYLKPPDG  60
TEWRVDWTNR NGRTLFKRGW KEFVAYYSLD HGHVLWFEYN IGTSHIEVEI FDMSCLEIEY  120
PANDQIKKHP PQHRGQSVKR PKEQQTRDVD NSPNTQNMRL NEGRQKKRLN EPLSGGVRGQ  180
PRKKLRAPVS SASKGRQLEN DAQIRKGIKS EKKNHKMTVS VNQDSNGKSN RRRKDSESSV  240
RPYPAKPESL KEANKFKWEK PSFIIKIKQL SQTKAPCYFS TKFFRKYFEN NPQNANIRFG  300
KKLFPVKLIY RPSSCNAFIS AGWNFFARAS KLQAGDVCLF KLVNRKDPVL DVHICRRQRR  360
ESLSKPVTRG IQLLKEVKEL NSQNPSFMVK IKDSDPRRSR PNLSAIFYRK YFKKNQQNVK  420
LQFGKEMWPV TIIYNPSSRN TFISAGWSSF ARASKLETGD VCVFELINEK DLFNVHICRV  480
QC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q6TEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946746.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A445B1P90.0A0A445B1P9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15597210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein