PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Q22GT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 87aa MW: 10038.6 Da PI: 10.3197 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.2 | 1.2e-24 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrq+tfskRrng+ KK +ELSvLCd++va+i fs++++l +ss Aradu.Q22GT 25 KKIENVRNRQITFSKRRNGLVKKGYELSVLCDVDVALITFSPSDRLALFSS 75 78********************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-26 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-22 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-24 | 21 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.432 | 21 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-23 | 26 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-22 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-22 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MKMMFTLRSS SSEYENNTIP RVPIKKIENV RNRQITFSKR RNGLVKKGYE LSVLCDVDVA 60 LITFSPSDRL ALFSSSTTFN YSVYSFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 3e-15 | 21 | 85 | 4 | 72 | Myocyte-specific enhancer factor 2B |
1n6j_B | 3e-15 | 21 | 85 | 4 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_P | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6byy_B | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6byy_C | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6byy_D | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-15 | 20 | 85 | 4 | 73 | MEF2 CHIMERA |
6c9l_A | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-15 | 20 | 85 | 4 | 73 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Q22GT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029144619.1 | 5e-26 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 6e-23 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A444WNJ1 | 2e-50 | A0A444WNJ1_ARAHY; Uncharacterized protein | ||||
STRING | XP_006472982.1 | 2e-23 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-25 | AGAMOUS-like 104 |
Publications ? help Back to Top | |||
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