PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.PYB81 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 379aa MW: 43673.9 Da PI: 6.3827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84 | 2.3e-26 | 153 | 242 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+Y++ GF r+ k+ ++ + gei+++tfvC+++g+re++ + +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnHela Aradu.PYB81 153 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKDgSGRWYVSRFVEEHNHELA 242 9****************9998.8888***************997664678888999*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-23 | 153 | 242 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEFLLLKSGG VVLENSGGVV LTALSTSLAV LVAMLGGSGE CVWFSVTWQV ETVRMLESCW 60 IVDESVIMAS SSKFWKDACM WNEPLADYWM EGNGGGSNPQ DTMFDTRVEE DAELSDWEGR 120 GALMLPGFLG LDGLRAENVL EMEFSSPQEA GGFYNNYSRL KGFASRRGKT VRNTAGEIVR 180 YTFVCNRQGF REKKWLEKVD RKREHKVVTR CGCMAEMRIK RKDGSGRWYV SRFVEEHNHE 240 LAYGKLVDYL RSHRKISEVE VAQLTSKREI GISIPKIYES FAAQLGGFNL VTFTKQDMCV 300 DFLRDTEDEL EFCSWYGTPV LQTEFVELEK SRWMMFTREM FLRFRDSLKR CVRVRICEIN 360 DTANPHAYTL QKYRRPEMN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 350 | DSLKRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.PYB81 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015947585.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444YHK4 | 1e-172 | A0A444YHK4_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444Z0I7 | 1e-170 | A0A444Z0I7_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9185 | 2 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-23 | FAR1-related sequence 5 |