PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PIQ7X
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 560aa    MW: 63856 Da    PI: 9.4611
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PIQ7XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.7e-18117203191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.PIQ7X 117 KFYRNYAKAAGFSTRVRGTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 203
                  6***************998877..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-15117203IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.198339375IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-4348372IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4350377IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
ALLTYVEYTR YIISRVYLTS KFKIFVSFFV FVILRFGCSS SRASSLILLH RSFPLIFSLF  60
ELVLKIMDPS SSDCLLNPGE VDYEFESNEV PEPLSVVDDE LVPKVGMTFT TLENARKFYR  120
NYAKAAGFST RVRGTNRKGN EIKNQLITCS REGKWKSKIS PTEKTNPTAS LNCPARIYIH  180
TLKDVGAWII SKVVLDHSHP CCPSKAEMPK QHRELSMSIR HHHFWAGMRS TQRSESMHSF  240
FNKYITRNSS LIQFVKQYDN YLGSKEESDA ADFHTVIPCA TKSSIEAQFQ DAYTHAKFRE  300
VQAQFRGKAN CITRLKNSAL GYSVYEVGEQ VSSSIFDNFA VTYDSVAAEV KCQCLLFESR  360
GILCRHALSV LSFEQVSQVS PRYILERWSK KVKRRHTHIK SSHDEPLMEP RSKRFDQLVF  420
RLQNICEFAS ESEELTAILH RAYDNVMAEM EALKGKRKGT SSLSHEDANL ESVNELQSPP  480
RIRTRGRPKN RLGSKLEKQI ANAIKKKKTK VLSELMHECY IQINLFDAAS VAHSNCSQYQ  540
GHVINYQLRV PAAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PIQ7X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-28FAR1 family protein