PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PHY5X
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ZF-HD
Protein Properties Length: 360aa    MW: 39844.9 Da    PI: 8.2494
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PHY5XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.91e-32138192459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +rY+eCl+NhAas+G+h+vDGCgEfmps geegt+++l+CaAC+CHRnFHRreve 
  Aradu.PHY5X 138 ARYRECLRNHAASMGSHVVDGCGEFMPS-GEEGTPESLRCAACECHRNFHRREVEG 192
                  79*************************9.999*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015669.8E-31139190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-30139190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-20139192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.751140189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-29286355IPR009057Homeodomain-like
SuperFamilySSF466892.17E-19287354IPR009057Homeodomain-like
PROSITE profilePS500718.584291355IPR001356Homeobox domain
TIGRFAMsTIGR015658.1E-28293350IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MERRGEEDKE LEMATITATA TTTTTLGSYS VVVVPNNNNN RDSSSSTSSK LSSPTVVGAS  60
ETTHQPSQTH SLVFHHHDPP NHNHHHQHHL YPHLQPPNQQ SLRPTSDPDL TSSPIATTAP  120
QPPPPPPHAA ATTTTALARY RECLRNHAAS MGSHVVDGCG EFMPSGEEGT PESLRCAACE  180
CHRNFHRREV EGSAPQQHHN YYPNNNNNKH NGHSTHHLLQ FHTPPPSSSL HHQRFSHAIA  240
AAAPPSVQPV MMAFGGGGGG GAAESSSEDL NMFHHQSNAL GGQFSVQQAS ASKKRFRTKF  300
TQQQKDRMME FAEKLGWKIQ KHDEQEVQQF CSQVGVKRQV FKVWMHNNKQ AIKKQQQHHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242943491873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PHY5X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964167.10.0zinc-finger homeodomain protein 6
SwissprotQ9ZPW71e-69ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A444WRY81e-167A0A444WRY8_ARAHY; Uncharacterized protein
STRINGGLYMA01G37993.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.16e-64homeobox protein 24