PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.PHY5X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 360aa MW: 39844.9 Da PI: 8.2494 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.9 | 1e-32 | 138 | 192 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eCl+NhAas+G+h+vDGCgEfmps geegt+++l+CaAC+CHRnFHRreve Aradu.PHY5X 138 ARYRECLRNHAASMGSHVVDGCGEFMPS-GEEGTPESLRCAACECHRNFHRREVEG 192 79*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 9.8E-31 | 139 | 190 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-30 | 139 | 190 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 139 | 192 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.751 | 140 | 189 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 286 | 355 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.17E-19 | 287 | 354 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.584 | 291 | 355 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 8.1E-28 | 293 | 350 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MERRGEEDKE LEMATITATA TTTTTLGSYS VVVVPNNNNN RDSSSSTSSK LSSPTVVGAS 60 ETTHQPSQTH SLVFHHHDPP NHNHHHQHHL YPHLQPPNQQ SLRPTSDPDL TSSPIATTAP 120 QPPPPPPHAA ATTTTALARY RECLRNHAAS MGSHVVDGCG EFMPSGEEGT PESLRCAACE 180 CHRNFHRREV EGSAPQQHHN YYPNNNNNKH NGHSTHHLLQ FHTPPPSSSL HHQRFSHAIA 240 AAAPPSVQPV MMAFGGGGGG GAAESSSEDL NMFHHQSNAL GGQFSVQQAS ASKKRFRTKF 300 TQQQKDRMME FAEKLGWKIQ KHDEQEVQQF CSQVGVKRQV FKVWMHNNKQ AIKKQQQHHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-24 | 294 | 349 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.PHY5X |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015964167.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 1e-69 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A444WRY8 | 1e-167 | A0A444WRY8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G37993.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 6e-64 | homeobox protein 24 |