PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.PG28A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 163aa MW: 18207.5 Da PI: 10.4648 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.7 | 4.4e-34 | 25 | 151 | 2 | 125 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnss 86 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + +sss++++ n + Aradu.PG28A 25 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLphinnpftnlsgfPSSSSNSM---------INTN 113 689*************************************************************665555555553322222222.........2222 PP TCP 87 sg..........................kaaksaakskksqksaasalnlakesrakarararer 125 ++ + k+++ + + Aradu.PG28A 114 EAstsmfninrsihqwqglaqnyskwnnN---------------------------KSKSSSSTK 151 22111222222222444433333222221...........................222221111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.469 | 27 | 85 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.4E-33 | 27 | 155 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVLGVRSDSV VGVQDPRIVR VSRAFGGKDR HSKVCTIRGL RDRRVRLSVP TAIQLYDLQD 60 RLGLNQPSKV VDWLLNAAKH EIDELPPLPH INNPFTNLSG FPSSSSNSMI NTNEASTSMF 120 NINRSIHQWQ GLAQNYSKWN NNKSKSSSST KQASSEDNNQ MVC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 32 | 86 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.PG28A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015962659.1 | 1e-106 | transcription factor TCP13 | ||||
TrEMBL | A0A151RY71 | 1e-53 | A0A151RY71_CAJCA; Transcription factor TCP13 | ||||
STRING | XP_004499467.1 | 1e-52 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-45 | plastid transcription factor 1 |