PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.PES60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SRS | ||||||||
Protein Properties | Length: 203aa MW: 22929.9 Da PI: 8.4116 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 92.6 | 8.5e-29 | 21 | 78 | 3 | 60 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 + +++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstWvp+++rr r+ +++ + Aradu.PES60 21 QSSTKCQDCGNQAKKECSYWRCRTCCKNKGFHCQTHIKSTWVPVDRRRLRKVNNHFQL 78 56789********************************************987666544 PP | |||||||
2 | DUF702 | 62 | 2.2e-19 | 97 | 151 | 99 | 153 |
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ +lP+ +s+a+fr+v v+s+d + +e++Yqt v+igGhvf+G+Lyd+G++ Aradu.PES60 97 VEDKLKLPSATNSMAIFRRVEVRSMDHAVNEIGYQTCVNIGGHVFSGLLYDHGPA 151 445567***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.9E-41 | 23 | 151 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.2E-25 | 25 | 67 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.4E-16 | 103 | 150 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MPTATNSIEK EEEETGIKGD QSSTKCQDCG NQAKKECSYW RCRTCCKNKG FHCQTHIKST 60 WVPVDRRRLR KVNNHFQLYH PHISKKHKHF YSPSPGVEDK LKLPSATNSM AIFRRVEVRS 120 MDHAVNEIGY QTCVNIGGHV FSGLLYDHGP AAVAAAPFLD HHHQQNLNHG ASMGPVDDVD 180 EPFLPPPPLS DPLRTPYFSF PKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | RRRLRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.PES60 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932743.1 | 1e-153 | protein SHI RELATED SEQUENCE 3-like | ||||
Refseq | XP_025611435.1 | 1e-153 | protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A445CFL2 | 1e-152 | A0A445CFL2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G01160.2 | 2e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 1e-37 | SHI-related sequence3 |