PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.P04DI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23621.9 Da PI: 10.0163 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78 | 7e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n s rqvtfskRr+g++KKA+EL +LCdae+a+i+fs+t kl+ y++ Aradu.P04DI 9 KKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTSKLFQYAT 59 68***********************************************86 PP | |||||||
2 | K-box | 51.6 | 4.2e-18 | 93 | 170 | 19 | 96 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++ L+k+ e+ re+R+l GedL+ L+l+eL++Le+qL k+l++ + K+el++++i +l++k l een++L++ Aradu.P04DI 93 SNYDMLRKKEEQKARELRQLNGEDLQGLTLNELNKLEEQLIKGLSNASKVKDELFTQEIYTLKRKGAVLTEENHKLKQ 170 57889999999999**************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-29 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.91E-35 | 3 | 73 | No hit | No description |
Pfam | PF00319 | 7.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.71 | 88 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.7E-15 | 93 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MTRKKIEIKK IDNISSRQVT FSKRRKGLFK KAQELNTLCD AEIALIVFST TSKLFQYATS 60 SMQQLIERRN QHSPIQKSDP PSAVLQVESG AASNYDMLRK KEEQKARELR QLNGEDLQGL 120 TLNELNKLEE QLIKGLSNAS KVKDELFTQE IYTLKRKGAV LTEENHKLKQ ISSSFANEQR 180 SSFKSIVCNS SYLPEEDHGR DTNLKLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 8e-21 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_B | 8e-21 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_C | 8e-21 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
6bz1_D | 8e-21 | 1 | 86 | 1 | 86 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.P04DI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015956114.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Refseq | XP_015956115.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Refseq | XP_020994576.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Refseq | XP_025689869.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Refseq | XP_029153000.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Refseq | XP_029153001.1 | 1e-150 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 2e-51 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A444ZX29 | 1e-99 | A0A444ZX29_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444ZX62 | 1e-99 | A0A444ZX62_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G07260.3 | 1e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 8e-54 | AGAMOUS-like 24 |
Publications ? help Back to Top | |||
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