PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NVB9V
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24918.6 Da    PI: 9.8023
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NVB9VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.65.9e-271058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly++s
  Aradu.NVB9V 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFS 58
                 8**********************************************98 PP
2K-box83.74e-2874163998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                   ++++ + +q+e+a L++++ +Lq+++R+++Ge+L+ L++k+Lq Le+qLe sl+ +R+kK++ll+++i+el +k + +++en +L +k+
  Aradu.NVB9V  74 SSTSEVKFWQREAAMLRQQLLSLQESHRQIMGEELSGLTIKDLQTLENQLEISLRGVRTKKDQLLMDEIQELNRKGNLIHQENVDLYEKI 163
                  678899********************************************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.88161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-27272IPR002100Transcription factor, MADS-box
CDDcd002651.64E-37267No hitNo description
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2775163IPR002487Transcription factor, K-box
PROSITE profilePS5129715.779169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFSID  60
RYNKTKEELD QLGSSTSEVK FWQREAAMLR QQLLSLQESH RQIMGEELSG LTIKDLQTLE  120
NQLEISLRGV RTKKDQLLMD EIQELNRKGN LIHQENVDLY EKINLIRQEN MELKKKVYVT  180
KDQNVENRNS VLTNSLAIKD DSQVPQIAAA LMHLQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16158158MEF2C
5f28_B4e-16158158MEF2C
5f28_C4e-16158158MEF2C
5f28_D4e-16158158MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NVB9V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT4857959e-52CT485795.2 Medicago truncatula chromosome 5 clone mte1-33h11, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933095.11e-145MADS-box transcription factor 27 isoform X1
RefseqXP_015933097.11e-145MADS-box transcription factor 27 isoform X1
RefseqXP_025610454.11e-145MADS-box transcription factor 27 isoform X1
RefseqXP_025610455.11e-145MADS-box transcription factor 27 isoform X1
RefseqXP_025668023.11e-145MADS-box transcription factor 27 isoform X1
RefseqXP_025668024.11e-145MADS-box transcription factor 27 isoform X1
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A444Y9W91e-123A0A444Y9W9_ARAHY; Uncharacterized protein
STRINGGLYMA14G36221.21e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-98AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]