PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.NL5W9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14721.2 Da PI: 10.3426 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.9 | 3.2e-12 | 13 | 79 | 32 | 98 |
--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++lv+++++ Aradu.NL5W9 13 EGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQVGDTVTFSRLE-PEGRLVMGFRK 79 44568999***********9989999999***9.********************766.67777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0035 | 1 | 81 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.573 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.05E-10 | 4 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-10 | 4 | 79 | No hit | No description |
Pfam | PF02362 | 1.1E-9 | 13 | 79 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MKQAYFPPIS QPEGLPLKIL DAKGKEWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQVGD 60 TVTFSRLEPE GRLVMGFRKA SNATPSDQRF HFWKQKKPLI SNCGAICNSL QKIKTDKYIQ 120 RQPKVID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 8e-45 | 3 | 83 | 46 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 8e-45 | 3 | 83 | 47 | 127 | B3 domain-containing transcription repressor VAL1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.NL5W9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-61 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943443.1 | 1e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_016180730.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_020970625.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_020989871.1 | 1e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_025622085.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_025681660.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_029145383.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Refseq | XP_029152134.1 | 2e-52 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q5CCK4 | 1e-45 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A444WY85 | 6e-55 | A0A444WY85_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA15G07350.1 | 9e-50 | (Glycine max) | ||||
STRING | XP_007148240.1 | 1e-49 | (Phaseolus vulgaris) | ||||
STRING | XP_010040771.1 | 4e-50 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29934 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 5e-48 | HSI2-like 1 |
Publications ? help Back to Top | |||
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