PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.N9KWN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24246.7 Da PI: 8.7083 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +i++ Aradu.N9KWN 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVM 48 8************************************97 PP | |||||||
2 | K-box | 72.3 | 1.4e-24 | 67 | 147 | 12 | 92 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 + a++ ++e+a L+++++ Lq+ +R+l+Ge+L+ L ++eLq+Le+qLe slk +R kK+++++++i+el +k e++++n Aradu.N9KWN 67 NPASEVKREAASLRQQLQHLQECHRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNG 147 4467899******************************************************************99999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.38 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-23 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.37E-32 | 2 | 62 | No hit | No description |
PRINTS | PR00404 | 1.7E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-20 | 10 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.524 | 69 | 185 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.5E-22 | 70 | 146 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIVMKS IIERYNKLKE 60 EHNQLMNPAS EVKREAASLR QQLQHLQECH RKLMGEELSG LGVQELQNLE NQLEMSLKGV 120 RMKKDQIFTD EIKELHQKVY EARSTNGENA ASNPPYTIGN GYDLLAPISL QLSQPETQYT 180 EPPAKAMKLG NQISASDCSC NNKNCSRIVD DYHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for root plasticity in response to nitrate, NO(3)(-). Promotes lateral root growth in a NRT1.1-dependent manner. {ECO:0000269|PubMed:15667327, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.N9KWN |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate in root cell culture, (PubMed:9430595, PubMed:17148611). In roots, seems induced by nitrogen (N) deprivation (e.g. nitrate free medium) but rapidly repressed by N re-supply (e.g. nitrate, glutamine and ammonium) (PubMed:16021502). Slight repression in shoots during nitrogen (N) deprivation. {ECO:0000269|PubMed:16021502, ECO:0000269|PubMed:17148611, ECO:0000269|PubMed:9430595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096810 | 2e-31 | BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025622236.1 | 1e-142 | MADS-box transcription factor 23 | ||||
Refseq | XP_025681007.1 | 1e-142 | MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_025681008.1 | 1e-142 | MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q9SI38 | 1e-61 | ANR1_ARATH; MADS-box transcription factor ANR1 | ||||
TrEMBL | A0A444WXJ9 | 1e-135 | A0A444WXJ9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G32810.1 | 2e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 4e-64 | AGAMOUS-like 44 |
Publications ? help Back to Top | |||
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