PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N4SND
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 484aa    MW: 55415.7 Da    PI: 9.1324
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N4SNDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.15.3e-1767153191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++  ++ei+++  +Cs+e k +++ +    +++t+ +   +C a+++++  k  g w ++k++l+H+H+++p
  Aradu.N4SND  67 KFYRNYAKAAGFSTRVRCTNRK--ENEIKNQLITCSRERKWKSKISP---TEKTNLTAGLNCPARIHIHTLKdVGAWIISKVVLDHSHPCCP 153
                  6***************988776..7779************9998777...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1467153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVDSTSDSQL NQGKVDYEFE SNEVPEEMLR CRSELSLGVF VSSLSVVDDE LVPKVGMTFT  60
TLEDAGKFYR NYAKAAGFST RVRCTNRKEN EIKNQLITCS RERKWKSKIS PTEKTNLTAG  120
LNCPARIHIH TLKDVGAWII SKVVLDHSHP CCPSKAEMLK QHRELSMSIR RTIENNEEAD  180
LYEDRHIWVP IYLDHHFWFV KQYDNCLGSR AQAERESDAA DFHTVIPCAT KSSIEAQFQD  240
AYTHSKYREV QAQFREKANC ITRLKNSALG YLVYEVGEQV SSSIFNKFVV TPAQYSTSLW  300
LLTTQWQSSQ VSPRYILERW SKKVKRRHTH IKSSHDEPLM ELRSKRFDQL VFRSQNICEF  360
ASESKELTAI LHRSYDNVMA EMESLKAKRK GTSSLSNEDA NLESVNELQS PPRIRTRGRS  420
KNRLGLKLDK QIANATKKKK TKVLSEINLF DAASVVHSNS SQYQGHVMNN QFRVLAAGDN  480
SLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N4SND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-173HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-167protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-09FAR1 family protein