PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.N3085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 15792.1 Da PI: 9.5778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.5e-17 | 22 | 103 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 l+++ l +p kf+ ++ k + tl + g +W+v++ k+ +++++ GW++F ++n +k Df+vF++dg+ + f +v++f Aradu.N3085 22 LNTHHLKIPTKFL-NYLDK-KLMSNATLIGPCGGKWQVTI--IKRENGVYMDHGWSKFLQENLVKHEDFLVFTYDGNnNHF--KVQIF 103 56778********.66333.35558***************..999999***************************976666..99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-22 | 8 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.69E-21 | 9 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.66 | 12 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.07E-19 | 13 | 104 | No hit | No description |
SMART | SM01019 | 1.6E-9 | 14 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-14 | 22 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MMHHHHQQNK PNSFCAIIMN GLNTHHLKIP TKFLNYLDKK LMSNATLIGP CGGKWQVTII 60 KRENGVYMDH GWSKFLQENL VKHEDFLVFT YDGNNNHFKV QIFCKNGCEA PKPNVGNGTK 120 KSRPTTSCPQ ISPENERS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.N3085 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539033.2 | 2e-26 | B3 domain-containing protein Os11g0197600 | ||||
Refseq | XP_004507367.1 | 1e-27 | B3 domain-containing protein Os11g0197600-like | ||||
Refseq | XP_028186698.1 | 2e-26 | B3 domain-containing protein Os11g0197600-like | ||||
TrEMBL | A0A445A8W9 | 2e-88 | A0A445A8W9_ARAHY; Uncharacterized protein | ||||
STRING | XP_004507367.1 | 4e-27 | (Cicer arietinum) | ||||
STRING | GLYMA11G13231.1 | 7e-26 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14239 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 4e-16 | B3 family protein |