PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ME16A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 394aa    MW: 44933.5 Da    PI: 8.4795
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ME16AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1232.7e-071241754091
         FAR1  40 kreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +r+ ++k  + +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.ME16A 124 ERKWKSKI-SPTEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 175
                  44544444.788999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-5130175IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186299335IPR007527Zinc finger, SWIM-type
PfamPF044349.4E-5301332IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4310337IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
VFVILIFDCS SSCASSLLLL HRSFPLLFSL VCSSFTLLSS LCATRVSFSI LICCFLKSKF  60
ELVLKIMDHL TSDCQLNPGE VDYEFESNEV PEVYYIRHDW VGMTFTTLED AGKFYRNYAK  120
AAGERKWKSK ISPTEKTNPT AGLNCPARIY IHTLKDVGAW IISKVVLDHS HPCCPSKAEM  180
LKQHKELSLS IRRTIENNEE AGIRPSKTYQ SFVAAAGGHR EEQAERESDA ADFHTVIPCA  240
TKSSIEAQFQ DVYTHQKFRE VQAQFRGKAN CITRLTNSAL GYSVYEVGEQ VSSSIFNKFV  300
VTYDSVAAEV KCQCLLFESR GILCRHALSV LSFEQVSQVS PRYILERWSK KVKRRHTHIK  360
SSHDEPLMEQ EARGLTNWFF VRKIFANLHP NRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ME16A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445A2R80.0A0A445A2R8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.22e-18FAR1-related sequence 4