PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M8FIQ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 465aa    MW: 49637.8 Da    PI: 8.8877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M8FIQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-115275427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                 ++C +++rtG+C yG+rC+++H++
  Aradu.M8FIQ 52 PNCVYYMRTGYCGYGARCRYNHPR 75
                 78********************96 PP
2zf-CCCH40.64.3e-1396120327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C+++++tGtCk+G++CkF+H++
  Aradu.M8FIQ  96 EPPCQYYLKTGTCKFGASCKFHHPK 120
                  79*********************96 PP
3zf-CCCH36.86.7e-12141165226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG+Ck+G +CkF+H+
  Aradu.M8FIQ 141 GEKECSYYLKTGQCKFGVTCKFHHP 165
                  7899********************8 PP
4zf-CCCH35.71.4e-11296322127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++tG Ck+G+ C++ H++
  Aradu.M8FIQ 296 PGQPECQYYLKTGDCKFGSACRYDHPR 322
                  5789*********************96 PP
5zf-CCCH32.91.1e-10341366227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +  +C f++++G+Ck+G++CkF H++
  Aradu.M8FIQ 341 GVQPCAFYLQNGHCKFGSTCKFDHPF 366
                  6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1834876IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-85275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.04293121IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-693120IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-697120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948139167IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6141166IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4145164IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788295323IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5299323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4301322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075339367IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6341370IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8341366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4343364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MELYGRNPGR NGSNPGNQPE WRSPGPDTGL EESMWQLTLA SSESYPERPS APNCVYYMRT  60
GYCGYGARCR YNHPRDRAAV AAAVRATGEY PERAGEPPCQ YYLKTGTCKF GASCKFHHPK  120
HGGGSLSQAP LNIYGYPLRP GEKECSYYLK TGQCKFGVTC KFHHPAAGTS LPASAPQFYQ  180
QVQSPTVPLP DQYGGASTSL RVARPPMLAG SYVQGAYGPV LLSPGVVPFP GWSPYSAPVS  240
PVLSPGAQPA VGATSLYGVT QLSSSTSAFA RPYTPLPSSI GPSGSGQKEE VFPERPGQPE  300
CQYYLKTGDC KFGSACRYDH PRDRGVTRPL LSPIGLPLRP GVQPCAFYLQ NGHCKFGSTC  360
KFDHPFGPVR YSPSTSSLTD APVTPYPVGS LLSTLAPSLT SSELRPELMS GSKMESSFST  420
RMPSSGNSPT TSVSLIFSQG GTVSLSDVQL STQSSAPLST SRSTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M8FIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969034.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_016205158.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_025604114.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_025660720.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445CMC00.0A0A445CMC0_ARAHY; Uncharacterized protein
STRINGGLYMA02G17260.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein