PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M78YV
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 136aa    MW: 15752.2 Da    PI: 9.5813
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M78YVgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-101291484
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
           B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84
                 +l++++  ++ +l+lp +f+++  g+k+   ++ + d  g  ++v ++ + ++ r ++++kGW+ F + + L++g  + +++
  Aradu.M78YV 12 KLISKYQAAEYILTLPISFVQRAFGIKPD--QVDVVDDAGVCYKVHVRSKPSRPReCYFAKGWRPFSQHHMLRTGSAIRLMV 91
                 678889999999********999777555..59999***********664444447********************999983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.5869108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-911100IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-72095IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1022104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-72484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MLPNREAIVV DKLISKYQAA EYILTLPISF VQRAFGIKPD QVDVVDDAGV CYKVHVRSKP  60
SRPRECYFAK GWRPFSQHHM LRTGSAIRLM VYSFKNWRVH CHVLFRSSFV LEYKHLDNAA  120
YDRTVAPYGF IGDDSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M78YV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020962118.11e-68uncharacterized protein LOC107608425
TrEMBLA0A445C9I51e-57A0A445C9I5_ARAHY; Uncharacterized protein