PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.M35ST | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SBP | ||||||||
Protein Properties | Length: 448aa MW: 50744.7 Da PI: 6.2818 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.5e-41 | 172 | 248 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC+vhsk+++v+v+g+eqrfCqqCsrf l efD++krsCrrrLa+hnerrrk+q Aradu.M35ST 172 VCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFQLLAEFDDGKRSCRRRLAGHNERRRKPQ 248 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.2E-33 | 167 | 234 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.086 | 170 | 247 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.79E-39 | 171 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-31 | 173 | 246 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MEPWSYVPDE KGYLFSDEMD FSLDAFVRSR KAMTEWDNKA SCNFERGGFN SEREVVRSME 60 FVDLGFPDLF RKPFELDSNL SRRGNTSAQV IDLDSSLGEE ESESKHLSSL GELKAQDTSL 120 IDLKLGRIAD CQAASNDKVG NEGFTLIPMQ QPSPTTLAKR ARTSCSPNQT PVCQVYGCNM 180 DLSSSKDYHK RHKVCDVHSK TAKVIVNGIE QRFCQQCSRF QLLAEFDDGK RSCRRRLAGH 240 NERRRKPQFD YMTSKQHKIL HSHQGARYME SSLQKRPQFS FPDIFRSGKY DKISQNGNVK 300 LEEEFIFSPQ FAAPVAHGQE LSSRALSLLS AQSQIPSRPS EENPLASSFS FHSISEMPLD 360 ISNEGKYVVD ESFPCEMNHK EFIKSESAML SDAGHPDHRA SSDDICSPLE HGSTVDLFQL 420 SSNLERVEQK RNSVLVKWEN ENSCFPAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 172 | 246 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.M35ST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF312227 | 0.0 | KF312227.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965744.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_025700324.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_029154219.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A445D560 | 0.0 | A0A445D560_ARAHY; Uncharacterized protein | ||||
STRING | XP_007153485.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-56 | SBP family protein |