PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M2I8I
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 752aa    MW: 81997 Da    PI: 6.8716
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M2I8IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-11301357155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Aradu.M2I8I 301 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 357
                  57*******************4444.2455535555.779999**************98 PP
2AP246.68.8e-15400451155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Aradu.M2I8I 400 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 451
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-19301367No hitNo description
SuperFamilySSF541711.11E-14301367IPR016177DNA-binding domain
PfamPF008471.3E-8301357IPR001471AP2/ERF domain
SMARTSM003809.2E-23302371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-12302366IPR001471AP2/ERF domain
PROSITE profilePS5103217.319302365IPR001471AP2/ERF domain
PRINTSPR003676.5E-6303314IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17400460IPR016177DNA-binding domain
CDDcd000187.29E-25400459No hitNo description
PfamPF008471.1E-9400451IPR001471AP2/ERF domain
PROSITE profilePS5103219.045401459IPR001471AP2/ERF domain
SMARTSM003802.8E-33401465IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18401459IPR001471AP2/ERF domain
PRINTSPR003676.5E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MASMNLLGFS LSPQEHTTTT HHHHQTRFGL FNPTAQDDVT AADDGNCFDL TPSTHAATTL  60
NLPPFPIYQE PFNNHHHLST HQDWKENNYI NQNLLLETSC NNNNNVDNNH HHHHQQPKLE  120
NFLGGHSFAD HHHDYGANSS GDYLFQNCSH PEVTAGGGEG SAGGGGGSTN SIGLSMIKTW  180
LRNQPLHHHH SSENKETMIA SSNNTTAPTT QTLSLSMSTG SQSLPLLPPT NNNNVSVAGA  240
GAGGGGGDSY SSSEINSNNN NKQIVVVAGG SSSTGAVENG SIVENNNVTK KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK EEKAARAYDL AALKYWGTTT  360
TTNFPISQYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM NRYDVKSILE SSTLPIGGAA  480
KRLKDMDNGD LINVDNSVHQ RQHQEDHSNN INSHSLTDGI NNFVTAAAAT HHGGWPASLA  540
FQHYPANYGS SSSSSQRFWC KQEQDSSDQN NVSHNFHQEI HPLQLGGSTH NFFQHGIMTL  600
DHSASMDNNN SSGSSSVVYG GGGGGGGGGD VNGYVFQMGA VIGNDNNEIK GLGYESVFGS  660
EAYNQTHGRH LYYQQQSSTM DHNNNGAVVV KGSPYDHHHH HGGGSNNWVP TAIPTLAASR  720
GLCHGAPPFT LLHEMNECMK NSLLELLSHS QG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M2I8I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8999091e-171AY899909.1 Medicago truncatula AP2/EREBP transcription factor BABY BOOM (BBM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025696403.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A444ZR040.0A0A444ZR04_ARAHY; Uncharacterized protein
STRINGXP_007139701.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-123AP2 family protein