PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M0ZRG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 284aa    MW: 32661.7 Da    PI: 7.6607
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M0ZRGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-2190150257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Aradu.M0ZRG  90 RQRWTPTPLQLQILERIFDQgNGTPSKEKIKEITSELshhgQISETNVYNWFQNRRARSKR 150
                  89*****************99**************************************97 PP
2Wus_type_Homeobox101.17.9e-3389151264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +r+RWtPtp Q++iLe+++++G  tP+ke+i++it+eL+++G+i+++NV++WFQNr+aR+++k
        Aradu.M0ZRG  89 SRQRWTPTPLQLQILERIFDQGNGTPSKEKIKEITSELSHHGQISETNVYNWFQNRRARSKRK 151
                        789***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-1885156IPR009057Homeodomain-like
PROSITE profilePS5007115.3786151IPR001356Homeobox domain
SuperFamilySSF466891.11E-1888153IPR009057Homeodomain-like
SMARTSM003892.5E-1488155IPR001356Homeobox domain
CDDcd000863.52E-1390151No hitNo description
PfamPF000461.6E-1990150IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVVKMIEWQK QLQNNEKADR TNNNMVFVKV MTDEQLETLR KQIAVYATLC DQLVEMHRTL  60
STHHDLAGVR VGNIYCDSLM TSAGQKITSR QRWTPTPLQL QILERIFDQG NGTPSKEKIK  120
EITSELSHHG QISETNVYNW FQNRRARSKR KLQNNVPHTT IEPEVDAEVD SKDKKTRPEE  180
LIDSQQQQHS TIMMTNASAA NRSEKLCFQN PELQYLNNQH PNKNNKSDPI FTSDGTLRPL  240
RNFSRMPVFD DVLSNSRGDY LDGKMEVGGM YNLYQQGGDY NLGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M0ZRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5022590.0KM502259.1 Arachis hypogaea wuschel-related homeobox 13A (WOX13A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020987130.10.0WUSCHEL-related homeobox 13 isoform X1
RefseqXP_020987131.10.0WUSCHEL-related homeobox 13 isoform X3
RefseqXP_025620920.10.0WUSCHEL-related homeobox 13 isoform X2
SwissprotO817883e-77WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A445BDX50.0A0A445BDX5_ARAHY; Uncharacterized protein
STRINGGLYMA10G43580.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-79WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]