PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M0WLK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 688aa    MW: 77224.6 Da    PI: 6.663
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M0WLKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.29.6e-211332231198
                  HHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v+r
  Aradu.M0WLK 133 STHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGQNGELRVGVRR 223
                  57889999************977777788*************************************************..3489999****98 PP
2Auxin_resp97.61.8e-32249330183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe++ds    +r+sGt+vg++d++p +W+nSkWrsLk
  Aradu.M0WLK 249 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLDAVNNKFSVGMRFKMRFEGDDSTDtdKRFSGTIVGLEDISP-HWENSKWRSLK 330
                  789***************6..9*******************************97522688**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.3E-13126225IPR003340B3 DNA binding domain
CDDcd100171.15E-14133223No hitNo description
Gene3DG3DSA:2.40.330.104.9E-33133238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-30133252IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-18133223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279162225IPR003340B3 DNA binding domain
PfamPF065072.0E-30249330IPR010525Auxin response factor
PfamPF023091.3E-6437613IPR033389AUX/IAA domain
PROSITE profilePS5174523.482577658IPR000270PB1 domain
SuperFamilySSF542771.37E-11578653No hitNo description
PfamPF023092.4E-6618661IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MMLNRGSNVS AEGGGDELYS QLWKACAGPL VDVPRVGERV FYFPQGHMEQ LEASTNQELN  60
QRIPLFKLPS KILCRVVNIH LLAEQETDEV YAQITLVPES NQADEPTXXX XXXXXXXXXX  120
XXXXXXXXXX XXSTHGGFSV LRKHATECLP ALDMSQPTPT QELVAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGQNGELRVG VRRLARQQSN MPSSVISSQS  240
MHLGVLATAS HAVATQTLFV VYYKPRTSQF IISLNKYLDA VNNKFSVGMR FKMRFEGDDS  300
TDTDKRFSGT IVGLEDISPH WENSKWRSLK VQWDEPAAVP RPDRVSPWEM EPYVAPALTS  360
SVQPAVVKAK RPRPPSEHPD LDTQSAASVF WDSGLTQADM TQHSVMAESK RSDTTSVWHH  420
KQIDMNSKSN SNLMSRNQTE GSWLSSPHSS CPSQLFQDTM DDSKSVSAWP APNPHSSRLN  480
NDHVHDQVDK ENKAETATSC RLFGIDLIDH SRNSSAVEKA AAQAVNIHSF TSEGCVSRVS  540
KTEAGQKFDA SKTGKEKKQE QQQVLPKETQ SKQICSRSRT KVQMQGVAVG RAVDLTMLDG  600
YEHLIVELEE LFDIKGQLQD RNKWEIVFTD DEGDMMLVGD DPWPEFCHMV RRIFICSSQD  660
VKKMSTGSKL PISSIEEGTV ISSETAET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-154103528354Auxin response factor 1
4ldw_A1e-154103528354Auxin response factor 1
4ldw_B1e-154103528354Auxin response factor 1
4ldx_A1e-154103528354Auxin response factor 1
4ldx_B1e-154103528354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M0WLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950076.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445AJ590.0A0A445AJ59_ARAHY; Auxin-induced protein
STRINGGLYMA03G17450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9