PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.LR6SL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 277aa MW: 32498.4 Da PI: 10.1032 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 13 | 92 | 11 | 95 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++r+ +p+kf ++hg+ s + l+ ++g W+v+ +k+s+++++ kGWkeF k L+eg vvFk++++s+f v Aradu.LR6SL 13 TNLQRIKIPNKFSRRHGSA--LSNPVFLKPPDGTLWKVYW-TKKNSDEVWFVKGWKEFTKNYSLNEGYLVVFKYEETSQF--DVI 92 456899**********966..7778***************.5889999**************************998988..444 PP | |||||||
2 | B3 | 43.6 | 5.4e-14 | 210 | 276 | 30 | 98 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + k++ l+ r+W+vkl +++s r l++GW+ Fv++ngL++ D++vF+l++ ++ ++v+vf+ Aradu.LR6SL 210 EDKVKDVALK-VGERQWQVKLLPCRSSAR-RLSGGWSLFVHENGLQAEDVCVFELINMEDSVFKVHVFK 276 3333444444.367*******77777666.6999*********************97777777999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.62 | 3 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-20 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-20 | 5 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.36E-15 | 5 | 94 | No hit | No description |
SMART | SM01019 | 3.0E-13 | 6 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-13 | 13 | 90 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-17 | 181 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-14 | 183 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.12E-13 | 185 | 276 | No hit | No description |
SMART | SM01019 | 2.5E-5 | 185 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-11 | 206 | 277 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.716 | 223 | 277 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MLHSRFFKAI LKTNLQRIKI PNKFSRRHGS ALSNPVFLKP PDGTLWKVYW TKKNSDEVWF 60 VKGWKEFTKN YSLNEGYLVV FKYEETSQFD VIILETNDLE IDYSKYETVN RNGKCDQRDE 120 KTVGILKEIP VKNNDAGKRL TLFSPQPHMK VRGESSTRRR TSSLNWPKEL KAQEIAQKFI 180 SYNPFFTLFI KPNYLTEYQV NVPTLKGYIE DKVKDVALKV GERQWQVKLL PCRSSARRLS 240 GGWSLFVHEN GLQAEDVCVF ELINMEDSVF KVHVFKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.LR6SL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936760.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A445BYY1 | 0.0 | A0A445BYY1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004500187.1 | 1e-100 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-19 | B3 family protein |