PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LR6SL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 277aa    MW: 32498.4 Da    PI: 10.1032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LR6SLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1613921195
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                 ++++r+ +p+kf ++hg+    s  + l+ ++g  W+v+   +k+s+++++ kGWkeF k   L+eg  vvFk++++s+f   v 
  Aradu.LR6SL 13 TNLQRIKIPNKFSRRHGSA--LSNPVFLKPPDGTLWKVYW-TKKNSDEVWFVKGWKEFTKNYSLNEGYLVVFKYEETSQF--DVI 92
                 456899**********966..7778***************.5889999**************************998988..444 PP
2B343.65.4e-142102763098
                  ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  + + k++ l+    r+W+vkl  +++s r  l++GW+ Fv++ngL++ D++vF+l++ ++  ++v+vf+
  Aradu.LR6SL 210 EDKVKDVALK-VGERQWQVKLLPCRSSAR-RLSGGWSLFVHENGLQAEDVCVFELINMEDSVFKVHVFK 276
                  3333444444.367*******77777666.6999*********************97777777999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.62397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-20496IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-205104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-15594No hitNo description
SMARTSM010193.0E-13697IPR003340B3 DNA binding domain
PfamPF023622.3E-131390IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-17181276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-14183276IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-13185276No hitNo description
SMARTSM010192.5E-5185276IPR003340B3 DNA binding domain
PfamPF023621.1E-11206277IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716223277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MLHSRFFKAI LKTNLQRIKI PNKFSRRHGS ALSNPVFLKP PDGTLWKVYW TKKNSDEVWF  60
VKGWKEFTKN YSLNEGYLVV FKYEETSQFD VIILETNDLE IDYSKYETVN RNGKCDQRDE  120
KTVGILKEIP VKNNDAGKRL TLFSPQPHMK VRGESSTRRR TSSLNWPKEL KAQEIAQKFI  180
SYNPFFTLFI KPNYLTEYQV NVPTLKGYIE DKVKDVALKV GERQWQVKLL PCRSSARRLS  240
GGWSLFVHEN GLQAEDVCVF ELINMEDSVF KVHVFKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LR6SL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936760.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445BYY10.0A0A445BYY1_ARAHY; Uncharacterized protein
STRINGXP_004500187.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-19B3 family protein