PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LP0MC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 454aa    MW: 48697.5 Da    PI: 7.781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LP0MCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-122833221155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Aradu.LP0MC 283 KRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 322
                  8******************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.462272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12276327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9283322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-14283339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-13283326No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13285331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSQCVPSWEV EDTNPPPPRP SLRSNSNSTI PDVPMLDYEV AELTWENGQL SMHGLGFPRV  60
PTKSSAVTTT ANKYTWEKPR ASGTLESIVN QATTTPQNAK STTFHGFGGG GNGGGVYENL  120
LVPWVDPHRV PATVISPGTS NTMTMDALVP CSNRVEEQRT PQVMDSISGG LGPCMAGRTT  180
RMGSGDAKDG GALEKRAAMV RRVPAPTVSA HEMSSRDQSV SGSATFGRES RHVTLDTCER  240
EFGVGFTTST SMGSPENTSS AKQCTKTNTI DDHDSVCHSR SMKRRDKINQ RMKTLQKLVP  300
NSSKTDKASM LDEVIEYLKQ LQAQVQMVNR INMSSMMLPM TMQQQLQMSM MAPMGMGMGM  360
GMGMGMAGMG MGMDMNTLSR TNIPPGIPPV LHPSPFMPMP SWDAAATATA AAATGAADRL  420
QGPTPSAMPD HLSSFFGCPS QVSKCSIINL YLLS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LP0MC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020960687.10.0transcription factor UNE10
TrEMBLA0A445CV840.0A0A445CV84_ARAHY; Uncharacterized protein
STRINGXP_002511647.11e-156(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-66bHLH family protein