PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LNZ6T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 408aa    MW: 44590.4 Da    PI: 7.4093
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LNZ6TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.9e-41115191278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls++++yhrrhkvCe hsk+++v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Aradu.LNZ6T 115 CLVDGCNSDLSTCRDYHRRHKVCELHSKTAQVTIAGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 191
                  **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-33108176IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.59112189IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-38113194IPR004333Transcription factor, SBP-box
PfamPF031104.6E-30115188IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDWNLKAPPS WDLTEVDEAT LPNIETVDGS TRFGVYRTKE GEFSVDLKLG QVGNSATEPV  60
LVTNSNKSNK DAVAAGVGVG VGVGVSNSKM VMQSPSSGSS KRARAINNGT QTVSCLVDGC  120
NSDLSTCRDY HRRHKVCELH SKTAQVTIAG HKQRFCQQCS RFHSLEEFDE GKRSCRKRLD  180
GHNRRRRKPQ PEPITRGGSF LSSFQGSQLL PFSGSHVFPS SGVVNAGWSA GLVTSCGDVR  240
LHSHSSQQQQ QMHMVDKQDL FLGSSPTPYN NNKEGKQQLA FLQVDNHHHH HAGAASSMCL  300
RNMFCDNTLT SSVHDSSCAL SLLSSPQTTH NPGNGLNQLV PQPHTHHTHH SSLMQQSLGL  360
SLHDSSSMES VDPVMGHSET EHCSSMYNMD SHGSHGSDPP QLFPFQWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-281151881184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171188KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LNZ6T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122320.0KF312232.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955608.10.0squamosa promoter-binding-like protein 13A
RefseqXP_015955609.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020994346.10.0squamosa promoter-binding-like protein 13A
RefseqXP_020994347.10.0squamosa promoter-binding-like protein 13A
RefseqXP_025689362.10.0squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_025689363.10.0squamosa promoter-binding-like protein 13A isoform X2
RefseqXP_025689364.10.0squamosa promoter-binding-like protein 13A isoform X2
TrEMBLA0A445DTH80.0A0A445DTH8_ARAHY; Uncharacterized protein
STRINGGLYMA05G38180.81e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-61SBP family protein