PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.LJV84 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SRS | ||||||||
Protein Properties | Length: 323aa MW: 35026.4 Da PI: 6.8273 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 211.1 | 2.8e-65 | 114 | 259 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++CqdCGnqakkdC h RCRtCC+srgf+C+thvkstWvpaakrrerq++la++++++ +a e + + + +++s +s+ +++ +++ le Aradu.LJV84 114 GTNCQDCGNQAKKDCLHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGDVH---SRRSREASACVPMPITTTGLEL 208 569****************************************************999988775554444433...3344444444555555667999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+e++s+avfrcv+vs +d +e +aYqtav+igGhvfkGiLydqG++ Aradu.LJV84 209 GQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPD 259 9************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.9E-63 | 114 | 259 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.9E-26 | 116 | 158 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.1E-23 | 210 | 258 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAGLFSLGPH HSKQEEQDQE ENNNNNSNIQ LLLRNEEIYT NSSTTNTNTN RGFEIWPHHH 60 QPSYYSFGLG PSSERNTTTT NLNDDVSVSF SDESNRFGFT VMRSSSSGSG LGSGTNCQDC 120 GNQAKKDCLH LRCRTCCRSR GFQCSTHVKS TWVPAAKRRE RQHTLASLQQ QQPGRAGEGE 180 GGGDVHSRRS REASACVPMP ITTTGLELGQ FPPELNSPAV FRCVKVSPMD APDERYAYQT 240 AVNIGGHVFK GILYDQGPDG PFATNAAAAG EGSSHGGGEP HHQQLSLITT TSGAGITFDP 300 SQLYPAPMNA FMAGTQFFPP PRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.LJV84 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015969639.1 | 0.0 | protein SHI RELATED SEQUENCE 3-like | ||||
Refseq | XP_025604863.1 | 0.0 | protein SHI RELATED SEQUENCE 3-like | ||||
TrEMBL | A0A445CK14 | 0.0 | A0A445CK14_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G37410.1 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-70 | SHI-related sequence 5 |