PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LJV84
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 323aa    MW: 35026.4 Da    PI: 6.8273
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LJV84genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.12.8e-651142595153
       DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102
                  +++CqdCGnqakkdC h RCRtCC+srgf+C+thvkstWvpaakrrerq++la++++++  +a e +   + +   +++s  +s+ +++  +++ le 
  Aradu.LJV84 114 GTNCQDCGNQAKKDCLHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGDVH---SRRSREASACVPMPITTTGLEL 208
                  569****************************************************999988775554444433...3344444444555555667999 PP

       DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                   ++P+e++s+avfrcv+vs +d  +e +aYqtav+igGhvfkGiLydqG++
  Aradu.LJV84 209 GQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPD 259
                  9************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-63114259IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.9E-26116158IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-23210258IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGLFSLGPH HSKQEEQDQE ENNNNNSNIQ LLLRNEEIYT NSSTTNTNTN RGFEIWPHHH  60
QPSYYSFGLG PSSERNTTTT NLNDDVSVSF SDESNRFGFT VMRSSSSGSG LGSGTNCQDC  120
GNQAKKDCLH LRCRTCCRSR GFQCSTHVKS TWVPAAKRRE RQHTLASLQQ QQPGRAGEGE  180
GGGDVHSRRS REASACVPMP ITTTGLELGQ FPPELNSPAV FRCVKVSPMD APDERYAYQT  240
AVNIGGHVFK GILYDQGPDG PFATNAAAAG EGSSHGGGEP HHQQLSLITT TSGAGITFDP  300
SQLYPAPMNA FMAGTQFFPP PRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LJV84
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969639.10.0protein SHI RELATED SEQUENCE 3-like
RefseqXP_025604863.10.0protein SHI RELATED SEQUENCE 3-like
TrEMBLA0A445CK140.0A0A445CK14_ARAHY; Uncharacterized protein
STRINGGLYMA17G37410.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-70SHI-related sequence 5