PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LBR45
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 832aa    MW: 92004 Da    PI: 5.1876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LBR45genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14655727268
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-.TTHHHH CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvlt.kGWkeF 68 
                  +kvl++sdv+++gr+vlpkk ae+h  +++ + ++t+t+ed  ++r+W+++++y  ++ks++y+l+ +GW +F
  Aradu.LBR45 655 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGITITMEDiGTSRVWNMRYRYwpNNKSRMYLLEnTGWFHF 727
                  79*************************99999*********7778*********8989999999987899777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-24647790IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15653727IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.5E-9654784IPR003340B3 DNA binding domain
PfamPF023621.4E-10655727IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MECEVGVQGL DLHAKVAKTE TVDPILGLGA MNHHHHNNHH HHDAEIYADA DDADKDLWLN  60
TTTEQEDLLV GDVKTDASMF YDQFPPLPDF PCMSSSSSSS STPTLPLKNL ACSTTSTTTA  120
TAATSSSSSS ASSWAVLKPE AEDNNNGEWN CSNKQQLYMQ HHDPLDATGA LSSTASMEIS  180
QPKFPDQDGF DGVVGEVDCM DDVMDTFGYM ELLEANEFFD PSSIFQGEEN PLAEFTQEDQ  240
VLPQQEEQQK QEKPAVVHNQ NDLVVLRPQQ EAVVEGVSNN NYEQLLGLCE ASNNNDVEIQ  300
ADAGGGGAIA DDEMSMVFLE WLKSNKDSVS ASDLRSVKLK KSTIESAAKR LGGGKEAMKQ  360
LLKLILEWVQ TSHLQSKRRK ENNNDNAVAN PFTEQFQNPI HQNQNNANAS SSFVIEPNTC  420
FTQQQPWMDQ APLMAAAPPP QFQPQPQFQQ PMVGYVGDPY TNAASANTMN GSNNFQAGNE  480
YHMLESANSW PPSQYTVTAY YTQPFGDHCF QPPAAGGFGN QYPYQFFHGH GDGLMRLGPS  540
ATKEARKKRM ARQRRLSSHS RHHINLQSQG SDPNARLGVG GENCTGVVSA APANWVYWPT  600
MAGAVASVAP VAPAEPSAVV DKPAMQTQNY HHQGRLSSDR RQGWKSEKNL RFLLQKVLKQ  660
SDVGSLGRIV LPKKEAETHL PELEARDGIT ITMEDIGTSR VWNMRYRYWP NNKSRMYLLE  720
NTGWFHFNDF GLYLLIFFFF IGFQLSSFLF GDFVKANGLQ EGDFIVIYSD VKCLFSMIRG  780
VKVRQQEGAK AEGKKTGKSH KKQHGNNAVP TAGAPYTNAT SSSSQQENEK ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-326507871110B3 domain-containing transcription factor FUS3
6j9b_D8e-326507871110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LBR45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960407.20.0B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLA0A444WQJ50.0A0A444WQJ5_ARAHY; Uncharacterized protein
STRINGGLYMA08G47240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-71B3 family protein