PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L8JIC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 348aa    MW: 40693.4 Da    PI: 10.231
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L8JICgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17258336687
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                    s+v++s+ + +p +fa++h   +e++  ++ ++  +r+W+v ++ +++s+r   + l++GW +F ++n+L++gD++vF+l+++
  Aradu.L8JIC 258 QESYVGSSC-VAIPATFARKHL--EEGP--IR-MNVGNRTWTVCYKTWRGSDRyrkHKLQSGWLRFRRENNLEVGDVCVFELISK 336
                  346777777.***********4..2355..55.45678*******999999998999************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.754137229IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-10137228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-8138228IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.054139229IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-18248341IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16249336IPR015300DNA-binding pseudobarrel domain
CDDcd100174.77E-16251334No hitNo description
PROSITE profilePS5086310.602252348IPR003340B3 DNA binding domain
SMARTSM010193.6E-7253347IPR003340B3 DNA binding domain
PfamPF023628.5E-15254339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MPLHERGFFK VLVLNFRHEL KIPKVFVKEY WRGVSNSIVL KLPNNLEQRV HWIQKNEDEQ  60
VSPKDDMLLV SLMHSMEAMS LGGLYLAKFS LHFGFFYLYP IIHSSKVLWV ARTEHQPLSI  120
PLSAELIAQP SQGLAFPLIV KMSQLSNSFD HMMIPKCANE YWKRMSNPIK LVLPYGVEKK  180
VNWTKRGEKI WLEQGWKKVV ELCGLSYEWL LTFDYNGRSS FEVKVYNTTA LRIAYYDRKK  240
TNTVNGRNGN PSFKIRIQES YVGSSCVAIP ATFARKHLEE GPIRMNVGNR TWTVCYKTWR  300
GSDRYRKHKL QSGWLRFRRE NNLEVGDVCV FELISKFPQT MTMRLQSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.L8JIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025663521.11e-167putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A444YGP31e-166A0A444YGP3_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-11related to vernalization1 1