PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.L6U41

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CPP

Protein Properties

Length: 368aa MW: 41473.6 Da PI: 4.8636

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.L6U41	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	26.2	1.6e-08	28	63	4	39
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 CnC++ +C++++C C ag +C+++C+C+ C N Aradu.L6U41 28 SCCNCRRIQCMNLFCVCLRAGDFCNDSCSCNWCLNI 63 57********************************96 PP
2	TCR	44.1	4e-14	100	138	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++kgCnC+kskC+ kYC Cf a++ Cs++C+Ce+C+Nk Aradu.L6U41 100 HRKGCNCRKSKCKSKYCACFRAEVGCSSRCRCEGCMNKY 138 689**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	0.0011	25	66	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	26.637	26	139	IPR005172	CRC domain
Pfam	PF03638	4.9E-6	29	62	IPR005172	CRC domain
SMART	SM01114	1.2E-11	99	140	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.9E-10	102	137	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MASLGSSPGG GNKKRKRSSS NNGDNNGSCC NCRRIQCMNL FCVCLRAGDF CNDSCSCNWC 60 LNIWENKDFV DEKKKEIELR DPHAFQPKII FGENETAAWH RKGCNCRKSK CKSKYCACFR 120 AEVGCSSRCR CEGCMNKYGN GIIKDEQEQC VLTNNNNGGN DVTVDNESSS SQSHHPVADN 180 DIFDQLSELD VDMVINEEDE AECYRQQMLL AGDGENEIYN DNMDMASNQV NHVPAAASYY 240 NYNVAAHNYH QPLTPEQIFR VENNTTEEQN TDICMLLDDP DLQGPSPFSF YDNNIVDESS 300 SVHNFSMMEP IIQSSIQRYK PQSKSYGDLF QQEASSSGGM NHRQHPSLLM NAQHQRQNDA 360 TNIQAHSY

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MASLGSSPGG GNKKRKRSSS NNGDNNGSCC NCRRIQCMNL FCVCLRAGDF CNDSCSCNWC  60
LNIWENKDFV DEKKKEIELR DPHAFQPKII FGENETAAWH RKGCNCRKSK CKSKYCACFR  120
AEVGCSSRCR CEGCMNKYGN GIIKDEQEQC VLTNNNNGGN DVTVDNESSS SQSHHPVADN  180
DIFDQLSELD VDMVINEEDE AECYRQQMLL AGDGENEIYN DNMDMASNQV NHVPAAASYY  240
NYNVAAHNYH QPLTPEQIFR VENNTTEEQN TDICMLLDDP DLQGPSPFSF YDNNIVDESS  300
SVHNFSMMEP IIQSSIQRYK PQSKSYGDLF QQEASSSGGM NHRQHPSLLM NAQHQRQNDA  360
TNIQAHSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-12	30	136	14	120	Protein lin-54 homolog
5fd3_B	1e-12	30	136	14	120	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	17	KKRKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.L6U41

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986735.1	0.0	uncharacterized protein LOC110275293
TrEMBL	A0A444XYU9	3e-70	A0A444XYU9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29794	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-27	Tesmin/TSO1-like CXC domain-containing protein