PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L4JLT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 706aa    MW: 78782.8 Da    PI: 6.5969
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L4JLTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-20134247198
                  EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfv 80 
                  f k+ltpsd++++g  ++ + +a+e+            +++++ s++l+ +d++g +W++k+         ++++r+++t+GW+ Fv +++L +gD +
  Aradu.L4JLT 134 FSKILTPSDTSTHGGCSIRRMHATEClpplpsppsdadENSPPPSQELVAKDLHGFEWKFKHVLrgkgdkGGSPKRHLFTTGWSTFVTSKRLVAGDAF 231
                  88*********************************99966677888****************88665544444555********************** PP

                  EEEE-SSSEE..EEEEE- CS
           B3  81 vFkldgrsefelvvkvfr 98 
                  vF   + +++e++v+++r
  Aradu.L4JLT 232 VFL--RGEDGEMRVGIRR 247
                  ***..4499*******98 PP
2Auxin_resp97.12.6e-32273352183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+ t+++F v+Y+Pr+  s+F++ ++k+++a+k+k+++GmR+km+fe e+s+err+sGt+vgv d++p  W+nS+WrsLk
  Aradu.L4JLT 273 ASHAVMTRTMFVVYYKPRS--SQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSP-GWSNSQWRSLK 352
                  689***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-29125276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-33125262IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-15132247No hitNo description
PROSITE profilePS5086310.941134249IPR003340B3 DNA binding domain
PfamPF023621.1E-17134247IPR003340B3 DNA binding domain
SMARTSM010194.2E-16134249IPR003340B3 DNA binding domain
PfamPF065071.1E-29273352IPR010525Auxin response factor
PfamPF023091.0E-11583679IPR033389AUX/IAA domain
SuperFamilySSF542771.7E-12593674No hitNo description
PROSITE profilePS5174523.846598681IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MANLECNLRG PPTPTAQTGE GDEDLYTELW KLCAGPLVDV PRTGERVYYF PQGHMEQLQA  60
STNQEVNQEL SQQIPHFNLP TKILCRVVHI QLLAEQETDE VYARITLLPE PDQKEPTIPD  120
PSPVESQRET FHSFSKILTP SDTSTHGGCS IRRMHATECL PPLPSPPSDA DENSPPPSQE  180
LVAKDLHGFE WKFKHVLRGK GDKGGSPKRH LFTTGWSTFV TSKRLVAGDA FVFLRGEDGE  240
MRVGIRRLAR QQIPMPSSVI SSQSMHLGVL ATASHAVMTR TMFVVYYKPR SSQFIIGLNK  300
YLEAVKNKFT AGMRYKMRFE VEESPERRFS GTIVGVGDVS PGWSNSQWRS LKVHWDEPAT  360
FPRPERVSAW EIEPFVVSTA LAKRPRHADH TSSSEIASNT PASAFWFHGS SMSHDPAELG  420
GAEVQCKENQ VVWSLRQKET NGNPMNSHSS SSRVRMEGIW SNSPHVSVPP NPPNNNAAAK  480
QGLSPISSKP NDDGLTHDKV EVDGRKKTEN PTKIFLFGVN LTNNFRSNVS LPEKEQACSA  540
IVPIGPKEST PITITASATQ NAQNSNYSVS DKEQQNQISS DVLPAEKPSK LASLPSMRTR  600
TKVQMQGVAV GRAVDLTMLN GYDELTIELE KLFHIEGELR SQNKWAVTFT DDENDMMLVG  660
DDPWPEFCNI VKRIYIYSRE DVKKMKYKLS VPSSDCEETL LSKEET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1511937513355Auxin response factor 1
4ldw_A1e-1511937513355Auxin response factor 1
4ldw_B1e-1511937513355Auxin response factor 1
4ldx_A1e-1511937513355Auxin response factor 1
4ldx_B1e-1511937513355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.L4JLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025603370.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445CPI30.0A0A445CPI3_ARAHY; Auxin response factor
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9