PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KWJ2K
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28301 Da    PI: 9.3458
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KWJ2KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl+ +ss
  Aradu.KWJ2K  9 KRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIIFSTKGKLFQFSS 59
                 79***********************************************96 PP

2K-box104.81e-3483174899
        K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                  ++++  +++++ e+akLk+++e Lqr+qRh++GedL+ Ls++eLq+LeqqL+++lk+iRs+Kn++++e+i+ lqkkek+l+e+n++L kk++
  Aradu.KWJ2K  83 ANAQGPNANWTLEHAKLKARVEVLQRNQRHFMGEDLQGLSMRELQNLEQQLDSALKQIRSRKNQIMYENISLLQKKEKALNEQNNSLAKKIK 174
                  455566789*********************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-33285IPR002100Transcription factor, MADS-box
CDDcd002651.98E-41279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.4189179IPR002487Transcription factor, K-box
PfamPF014864.2E-2989173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KANEISVLCD AEVALIIFST KGKLFQFSSD  60
SCMERIIERY ERYSYAERQQ LVANAQGPNA NWTLEHAKLK ARVEVLQRNQ RHFMGEDLQG  120
LSMRELQNLE QQLDSALKQI RSRKNQIMYE NISLLQKKEK ALNEQNNSLA KKIKGKEKAT  180
TEQTHQLELQ DNYTVAPQTS ENLNIRGMPQ DRSDNEEDND NEEGIQTNAS ANILLPNWMI  240
PPTNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-22174173MEF2 CHIMERA
6byy_B9e-22174173MEF2 CHIMERA
6byy_C9e-22174173MEF2 CHIMERA
6byy_D9e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KWJ2K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945915.10.0truncated transcription factor CAULIFLOWER A
RefseqXP_025623912.10.0truncated transcription factor CAULIFLOWER A
SwissprotQ424292e-99AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A445B3R11e-180A0A445B3R1_ARAHY; Uncharacterized protein
STRINGXP_008393256.11e-106(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-98AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]