PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.KT95M

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 939aa MW: 107379 Da PI: 8.411

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.KT95M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161.6	1.5e-50	61	176	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n + ++++ ++ ++pksg++iL++rk++r+frkDGy+wkkk dgktv+E+he+LKvg+ e +++yYah+++np + rrcyw Aradu.KT95M 61 EAKSRWLRPNEIHAILSNSKYFTIHVKPVNKPKSGRIILFDRKMLRNFRKDGYNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGLVRRCYW 158 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy+e++ Aradu.KT95M 159 LLDKRLEHIVLVHYRETQ 176 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.785	55	181	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.6E-72	59	176	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.6E-45	61	174	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.1E-6	360	474	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	6.02E-15	385	472	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.2E-4	385	471	IPR002909	IPT domain
SuperFamily	SSF48403	4.66E-19	559	683	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.7E-7	568	650	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.02E-15	570	680	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.1E-17	570	684	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.433	576	653	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.9E-5	621	650	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.98	621	653	IPR002110	Ankyrin repeat
SMART	SM00248	2400	660	691	IPR002110	Ankyrin repeat
SMART	SM00015	33	765	787	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.961	766	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.559	785	812	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0038	807	829	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.054	808	832	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0017	812	829	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	887	909	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.187	889	917	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MFNDDGAATK LNGSTCGFRD TWLPHIASNN GIWFRKYWWL FIPIGVQNLL LYLDVENTME 60 EAKSRWLRPN EIHAILSNSK YFTIHVKPVN KPKSGRIILF DRKMLRNFRK DGYNWKKKND 120 GKTVKEAHEH LKVGNEERIH VYYAHGQDNP GLVRRCYWLL DKRLEHIVLV HYRETQESQV 180 SPVTPVNSHS SSASDQPWLS EELDSGTNTA YASGFNDNLT VESHEMKLHE LNTLEWDDLV 240 LSNDNTSTIV TSGNVQSFNQ QNQSFLKGSS GNVASNLVPE IHSFSKLAQP IVESNSVPYS 300 IPDSVDFQRT SPISLAGVDS SNTLVNPSLQ SQDSFGMWIN NMISDSPPCS VESALESSIS 360 SSVQGQYSSL VAGNQLSSLP EQVFTITDVS PTWASSTEKT KILVTGLFHN DYQHLAKSNL 420 YCVCSDASIP VETVQLGVYR CWVSPHSPGF VNLYLSFDGR KPISQVVNFE YRTPLLHDPT 480 AFMEQKYDWE EFRLQIRLTN LLFDTKKSLD IFSSKVSPKS LKEARKFAFK TSFISKSWQY 540 LMKSTEENTI PFPQAKDDLF QIALKNRLKE WLLERISLGV KTTEHDKQGQ GVIHLCAILG 600 YTWAVSLFSW SGLSLDFRDK FGWTALHWAA YYGREKMVGT LLSFGAKPNL VTDPTPQNPG 660 GCTAADLAYI KGYDGLAAYL SEKSLVEQVN DMNLAGNISG PLETTTVDIG NTENLTEDQL 720 YLKETLASYR TAAEAAARIQ SAFREHSLKL RSMKIESLSP EDQERQIVAA MKIQHAFRNY 780 ETRKTMAAAA RIQYRYRTFK LRREFLHMKR QVIRIQAAFR GFQARKQYRK IIWSVGVLEK 840 VILRWRLKRK GFRGLQVNHD QEMKDETQGS DIEEDFFRTS RKQAEERVER SVVRVQAMFR 900 SKKAQEEYRR MKLAHNQAQL ELEFEELLIC GDDMITEKQ

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MFNDDGAATK LNGSTCGFRD TWLPHIASNN GIWFRKYWWL FIPIGVQNLL LYLDVENTME  60
EAKSRWLRPN EIHAILSNSK YFTIHVKPVN KPKSGRIILF DRKMLRNFRK DGYNWKKKND  120
GKTVKEAHEH LKVGNEERIH VYYAHGQDNP GLVRRCYWLL DKRLEHIVLV HYRETQESQV  180
SPVTPVNSHS SSASDQPWLS EELDSGTNTA YASGFNDNLT VESHEMKLHE LNTLEWDDLV  240
LSNDNTSTIV TSGNVQSFNQ QNQSFLKGSS GNVASNLVPE IHSFSKLAQP IVESNSVPYS  300
IPDSVDFQRT SPISLAGVDS SNTLVNPSLQ SQDSFGMWIN NMISDSPPCS VESALESSIS  360
SSVQGQYSSL VAGNQLSSLP EQVFTITDVS PTWASSTEKT KILVTGLFHN DYQHLAKSNL  420
YCVCSDASIP VETVQLGVYR CWVSPHSPGF VNLYLSFDGR KPISQVVNFE YRTPLLHDPT  480
AFMEQKYDWE EFRLQIRLTN LLFDTKKSLD IFSSKVSPKS LKEARKFAFK TSFISKSWQY  540
LMKSTEENTI PFPQAKDDLF QIALKNRLKE WLLERISLGV KTTEHDKQGQ GVIHLCAILG  600
YTWAVSLFSW SGLSLDFRDK FGWTALHWAA YYGREKMVGT LLSFGAKPNL VTDPTPQNPG  660
GCTAADLAYI KGYDGLAAYL SEKSLVEQVN DMNLAGNISG PLETTTVDIG NTENLTEDQL  720
YLKETLASYR TAAEAAARIQ SAFREHSLKL RSMKIESLSP EDQERQIVAA MKIQHAFRNY  780
ETRKTMAAAA RIQYRYRTFK LRREFLHMKR QVIRIQAAFR GFQARKQYRK IIWSVGVLEK  840
VILRWRLKRK GFRGLQVNHD QEMKDETQGS DIEEDFFRTS RKQAEERVER SVVRVQAMFR  900
SKKAQEEYRR MKLAHNQAQL ELEFEELLIC GDDMITEKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.KT95M

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015959568.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A444WPP0	0.0	A0A444WPP0_ARAHY; Uncharacterized protein
STRING	AES65041	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]