PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KG7S1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 396aa    MW: 44779 Da    PI: 10.4149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KG7S1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1120110299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fk+ +  ++l+ g l +pk f  +hg   +++  + l+ ++g  W++    + ++g++++++GWk+F++   L+ g ++ F ++++s+    v +f++
  Aradu.KG7S1  20 FKIVL-RHSLEDGKLKVPKMFNMKHGRGVPNP--VYLKPPDGTAWKIDW--SEYDGAILFENGWKGFASYYSLDNGHVLWFVYNQTSNI--EVYIFNR 110
                  55553.56777888********9**5554565..***************..*******************************9875554..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1714111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-718109No hitNo description
PROSITE profilePS5086311.22318111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-1618111IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-819110IPR003340B3 DNA binding domain
SMARTSM010191.5E-1119111IPR003340B3 DNA binding domain
PRINTSPR009293.3E-11197207IPR017956AT hook, DNA-binding motif
SMARTSM003843.1197209IPR017956AT hook, DNA-binding motif
PRINTSPR009293.3E-11257268IPR017956AT hook, DNA-binding motif
PRINTSPR009305.8E-6257269IPR000116High mobility group protein HMGA
SMARTSM003843.1259271IPR017956AT hook, DNA-binding motif
PRINTSPR009305.8E-6310329IPR000116High mobility group protein HMGA
PRINTSPR009293.3E-11319329IPR017956AT hook, DNA-binding motif
SMARTSM0038435321333IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000785Cellular Componentchromatin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MASSRFQKNK RSRSSVIRFF KIVLRHSLED GKLKVPKMFN MKHGRGVPNP VYLKPPDGTA  60
WKIDWSEYDG AILFENGWKG FASYYSLDNG HVLWFVYNQT SNIEVYIFNR TCLEIDYPSL  120
DHISDDDSIE ILNEQPPRGW PRKTEKAAPK TPSASTSKMV TSSAKTKVVK GCPERNYPSK  180
DHIDDVNMVK VENEPPRRGR GRPRKTEKAA RNKPSPCTSK KVTSSAKNRV VKRCPEIGYP  240
SKNHINNDNM VKVVNEPPRR GRGRPRKTEK AAPKKPSACT SKRFTSSANT RMVKWCPEID  300
YPSKDHIDDD NMVKVENEPP RRGRGRPRKK LKAAVEVSSP STSKTLWSSV KTGDVEKGPD  360
KQNWMLCCKN EEASQSEETG LKMPTIPSAS VGPDSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KG7S1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025624970.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A445B0T70.0A0A445B0T7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-17B3 family protein