PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.KAZ0G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18387.1 Da PI: 10.26 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 1.9e-26 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtfskRrng+lKK +ELSvLCda++ +i+fs+tgkl+ y Aradu.KAZ0G 9 KRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFRYF 58 79********************************************9995 PP | |||||||
2 | K-box | 37.6 | 9.4e-14 | 83 | 145 | 9 | 71 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 +++++e l +e+a L+ ++ +L+ + ++lGe++ L+++eL qLe+++++s+ ++R+ ++ Aradu.KAZ0G 83 GHSHHQEDLLTEMAMLRHQNLSLEMGIQRYLGEGIACLQYEELTQLEDEVQSSVARVRTGTKQ 145 4667888999************************************************86555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.81 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-32 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.97E-40 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 9.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-10 | 84 | 147 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.496 | 88 | 159 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MGRGKIEIKR IENTTTRQVT FSKRRNGLLK KTNELSVLCD AQIGLIVFSN TGKLFRYFSH 60 PYRMDQIIEK YQRSTGTRIT PHGHSHHQED LLTEMAMLRH QNLSLEMGIQ RYLGEGIACL 120 QYEELTQLED EVQSSVARVR TGTKQAQKQR TRIPTLTPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 1e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 1e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 1e-19 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.KAZ0G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020988400.1 | 3e-96 | MADS-box protein GGM13 isoform X2 | ||||
Refseq | XP_020988401.1 | 3e-96 | MADS-box protein GGM13 isoform X2 | ||||
Refseq | XP_020988402.1 | 3e-96 | MADS-box protein GGM13 isoform X2 | ||||
Swissprot | Q9ATE5 | 3e-46 | FBP24_PETHY; MADS-box protein FBP24 | ||||
TrEMBL | A0A444YPE8 | 5e-84 | A0A444YPE8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004498126.1 | 1e-63 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4935 | 29 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.1 | 4e-42 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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