PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.K3TQZ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 484aa MW: 55878.5 Da PI: 9.2656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.K3TQZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.8	2e-14	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk + F +r+++++k+ ++ei+++ +Cs+e k +++ + +++t+++ +C a++ + k g w ++k+ l+H+H+++p Aradu.K3TQZ 51 KFYKDYAKAASFFTRVRSTNKK--ENEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNCPARIYIYTLKdVGAWIISKVMLHHSHPCCP 137 6**************98887..7779*******99998776...8999*********9877769*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.679	280	316	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.9E-4	281	313	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0022	291	318	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MDDSTLDYQI NQRKVDFEFE SNEVPEPLSV VDEQLGPKVG MNFKTLEDAA KFYKDYAKAA 60 SFFTRVRSTN KKENEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIYTLKDVG 120 AWIISKVMLH HSHPCCPTQI EMLKQHRELS MSVHRTIENN EEARMKSTQR SESMHSFFNK 180 FITRNSSLIQ FVKQYDNCLG SREQAERESD AAHFHTVIPY ATKSSIEAQF QDFYTHQKFR 240 EVQAQFRGKA NCITRLTNSA LGYLVYEVGE QLFSSIFNKF VVTYDSVVAE VKCQCLLFES 300 RGILCHHALR VLSFERVLQV SSRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDELV 360 FCLQNICKFT SESEELTEIL HRVYDNVMVE MESLKAKRKG TSSLSHEDAN LESVNELQGS 420 PRIRTRGRPK NRLGSKLDKQ IANASKKKNT KALNELNVFD AASVVRPNSN QFRQPTAGDN 480 FLGV

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MDDSTLDYQI NQRKVDFEFE SNEVPEPLSV VDEQLGPKVG MNFKTLEDAA KFYKDYAKAA  60
SFFTRVRSTN KKENEIKNQL ITCSREEKWK SKISPTEKTN PTAGLNCPAR IYIYTLKDVG  120
AWIISKVMLH HSHPCCPTQI EMLKQHRELS MSVHRTIENN EEARMKSTQR SESMHSFFNK  180
FITRNSSLIQ FVKQYDNCLG SREQAERESD AAHFHTVIPY ATKSSIEAQF QDFYTHQKFR  240
EVQAQFRGKA NCITRLTNSA LGYLVYEVGE QLFSSIFNKF VVTYDSVVAE VKCQCLLFES  300
RGILCHHALR VLSFERVLQV SSRYILERWS KKVKRRHTHI KSSHDEPLLE PRSKRFDELV  360
FCLQNICKFT SESEELTEIL HRVYDNVMVE MESLKAKRKG TSSLSHEDAN LESVNELQGS  420
PRIRTRGRPK NRLGSKLDKQ IANASKKKNT KALNELNVFD AASVVRPNSN QFRQPTAGDN  480
FLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.K3TQZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-24	far-red elongated hypocotyls 3