PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JPM40
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 800aa    MW: 87737 Da    PI: 6.2893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JPM40genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-181775357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Aradu.JPM40 17 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                 6789*****************************************************97 PP
2START1754.7e-551673742204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  + +g  g+++l++++
  Aradu.JPM40 167 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSIVPTGsgGTIELIYMQ 263
                  68999*****************************************************.8888888888***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l++ Rdf++vRy+ +l++g++vi+++S++s +  p+   ss++vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + 
  Aradu.JPM40 264 TYAPTTLAAaRDFWTVRYTTSLEDGSLVICERSLTSSTGGPTgppSSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKIL 361
                  *************************************99999999***************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k + a+lq+ +
  Aradu.JPM40 362 AQKLTIAALQHIR 374
                  **********866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7421276IPR001356Homeobox domain
SMARTSM003898.6E-161480IPR001356Homeobox domain
CDDcd000861.04E-161777No hitNo description
SuperFamilySSF466891.24E-161779IPR009057Homeodomain-like
PfamPF000462.9E-161775IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-181975IPR009057Homeodomain-like
CDDcd146861.68E-669108No hitNo description
PROSITE profilePS5084825.608157358IPR002913START domain
CDDcd088754.11E-70161377No hitNo description
Gene3DG3DSA:3.30.530.209.4E-23165349IPR023393START-like domain
SMARTSM002341.6E-51166376IPR002913START domain
PfamPF018521.6E-52167374IPR002913START domain
SuperFamilySSF559614.94E-38167378No hitNo description
SuperFamilySSF559614.53E-5415499No hitNo description
SuperFamilySSF559614.53E-5527601No hitNo description
PfamPF086704.7E-26699796IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MALSMHKDAS NSMDSSKYVR YTPEQVEALE RVYAECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYMKQQ  120
IHTASATTTT DNSCESVVMS GQNQQQQNPT PQHPQRDANN PAGLLAIAEE TLAEFLSKAT  180
GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRPSWYRDC  240
RCLDVLSIVP TGSGGTIELI YMQTYAPTTL AAARDFWTVR YTTSLEDGSL VICERSLTSS  300
TGGPTGPPSS NFVRAEMLPS GYLIRPCEGG GSIIHIVDHV DLDVWSVPEV LRPLYESSKI  360
LAQKLTIAAL QHIRQIAQES SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFVEDGWSL  420
LGNDGVEDVT IAINSSPNKF LGSQYNSSMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE  480
HRSEWADYGV DAYSAACLKA TPYAVPCARP GGFPSTQVIL PLAHTIEHEE FLEVVRIEGH  540
AFSPEDVALA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP  600
KTDTPTTTRT LDLASTLEVG SGNTRAAGEA DDYNLRSVLT IAFQFTFENH LRDNVAAMAR  660
QYVRSVVGSV QRVAMAIAPS RLSTQLGPKS LPGSPEALTL ARWISRSYRV HTGSDLFRVE  720
STAGDAILKQ LWQHSDAIMC CSVKTNASPV FTFANQAGLD MLETTLVALQ DIMLDKVLDE  780
SGRKILCSEF SKIMQQVINK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JPM40
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015959291.10.0homeobox-leucine zipper protein ATHB-14
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A444ZDS40.0A0A444ZDS4_ARAHY; Uncharacterized protein
STRINGXP_004486450.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]