PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.JKM1G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 138aa MW: 14921.8 Da PI: 10.1577 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 84.7 | 2.2e-26 | 24 | 99 | 8 | 78 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaess 78 ++++h kv+gR R+ l+ +caar+F+L++eLG+++ + tieWLl+ a+p+i ++tg + +++s++ ++++ Aradu.JKM1G 24 NKDRHRKVNGRESRILLPPLCAARVFQLTRELGHKTHGDTIEWLLRHAEPSIAAATGGksivPPPPSSSTtNDNQG 99 79********************************************************655522222222233333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.5E-22 | 24 | 93 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.103 | 24 | 78 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MKFSSNNTPP PHKVSINNNN NINNKDRHRK VNGRESRILL PPLCAARVFQ LTRELGHKTH 60 GDTIEWLLRH AEPSIAAATG GKSIVPPPPS SSTTNDNQGV KNGGGDTGWL EYDVLANLGV 120 GFSANEIAVI QAMIKSFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.JKM1G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952557.1 | 2e-98 | transcription factor TCP20 | ||||
Swissprot | Q9C7G4 | 6e-24 | TCP22_ARATH; Transcription factor TCP22 | ||||
Swissprot | Q9FLM6 | 5e-24 | TCP6_ARATH; Transcription factor TCP6 | ||||
Swissprot | Q9LSD5 | 5e-24 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A445E4Q6 | 3e-96 | A0A445E4Q6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G20201.1 | 3e-34 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 1e-25 | TCP family protein |