PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.JI81D

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 458aa MW: 49608 Da PI: 8.702

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.JI81D	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	299	346	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Aradu.JI81D 299 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 346 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.06E-14	293	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.56E-9	293	348	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-15	295	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	295	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	299	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-8	301	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MVSSPSTAAP NFNMIQNDNS FVIRELIGKL GTIGGSSAEI SPHSQTVALY NNNNTTPSSS 60 CYSTPLNSPP KLNMPKPPPP SSSMALNSAT VAEFSADPGF AERAAKFSCF GSRSFNGRTT 120 TTTTTTTTSP LVMINNHNNN NNGAELTHQR SNPIHRVSSS PSLKSLGSQM EKICSSPLEM 180 AANSSQEEST ISEQNPNVEG AALKIASSSD MSSRKRKGSS RAKAKDSTKG GEGSEESNAK 240 RSKGNEGEGN ENNGRVKVEE ESKGEEKQQQ NNKSNNSKPP EPPKDYIHVR ARRGQATDSH 300 SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQFL SMKLASVNTR 360 MDLSIENIVP KDIFQSNHSL AHPIFPIDSS ATPFYGHQSQ QNPVIHNNIP NGSLPHNSVD 420 PLDSALCQTL GMQLPQLNAF NEIGSQVINN NNNTNNAY

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MVSSPSTAAP NFNMIQNDNS FVIRELIGKL GTIGGSSAEI SPHSQTVALY NNNNTTPSSS  60
CYSTPLNSPP KLNMPKPPPP SSSMALNSAT VAEFSADPGF AERAAKFSCF GSRSFNGRTT  120
TTTTTTTTSP LVMINNHNNN NNGAELTHQR SNPIHRVSSS PSLKSLGSQM EKICSSPLEM  180
AANSSQEEST ISEQNPNVEG AALKIASSSD MSSRKRKGSS RAKAKDSTKG GEGSEESNAK  240
RSKGNEGEGN ENNGRVKVEE ESKGEEKQQQ NNKSNNSKPP EPPKDYIHVR ARRGQATDSH  300
SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQFL SMKLASVNTR  360
MDLSIENIVP KDIFQSNHSL AHPIFPIDSS ATPFYGHQSQ QNPVIHNNIP NGSLPHNSVD  420
PLDSALCQTL GMQLPQLNAF NEIGSQVINN NNNTNNAY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.JI81D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015938868.1	0.0	transcription factor bHLH78
TrEMBL	A0A444XFC0	0.0	A0A444XFC0_ARAHY; Uncharacterized protein
STRING	XP_007140690.1	1e-174	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-55	bHLH family protein