PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.J9KV2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CO-like | ||||||||
Protein Properties | Length: 423aa MW: 47360.9 Da PI: 6.6888 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 27.8 | 5.2e-09 | 17 | 58 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + k+++++C ++ +lC+ C ++ H+ H+ Aradu.J9KV2 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHQ 58 578*****************************6567777776 PP | |||||||
2 | CCT | 68.1 | 2.4e-23 | 370 | 413 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a Aradu.J9KV2 370 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 413 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.793 | 15 | 62 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-10 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-7 | 17 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.21E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 370 | 412 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.1E-18 | 370 | 412 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSPSGKNVAN AVGGKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHQRL 60 RLKAATLDPL NTTSTCAPTW HHGFTKKART PRNGGKTNHS SSSTRPTSKS CWSSRINNQQ 120 PFHLVPEEGE GSDEVNSHEE NEEQLLYRVP VFDPFVADLC SPAENNTKKE SEESKSSFGS 180 HLHGFLPSEA ELAEFAADVE SLLGRGMENE CVGMEHLGLI DNNNNKVVKV EMEQEQEHMD 240 ATCSSCKLEE GDNDMMMMEI GRETAFQLSF DYDESHETEE IDKEKVNDDE DAINKKRKIL 300 LQLDYEGVIN AWGGSHKSPW TTGHKPNLDL HDCWPHTMAT GGTEFHHGYG ELMIGLGCNP 360 SSVILGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRASFAAPFP 420 LIA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 396 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.J9KV2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-47 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942187.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 | ||||
Swissprot | Q8RWD0 | 1e-108 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A445BEI7 | 0.0 | A0A445BEI7_ARAHY; Uncharacterized protein | ||||
STRING | XP_004497095.1 | 1e-159 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-106 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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