PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.J9KV2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CO-like
Protein Properties Length: 423aa    MW: 47360.9 Da    PI: 6.6888
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.J9KV2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.85.2e-091758338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 +r C+ +  k+++++C  ++ +lC+ C ++ H+       H+
  Aradu.J9KV2 17 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHQ 58
                 578*****************************6567777776 PP

2CCT68.12.4e-23370413144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Aradu.J9KV2 370 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 413
                  9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7931562IPR000315B-box-type zinc finger
SMARTSM003363.0E-101562IPR000315B-box-type zinc finger
PfamPF006431.5E-71759IPR000315B-box-type zinc finger
CDDcd000218.21E-91862No hitNo description
PROSITE profilePS5101716.083370412IPR010402CCT domain
PfamPF062037.1E-18370412IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSPSGKNVAN AVGGKTARAC DSCITKRARW YCAADDAFLC QACDSSVHSA NPLARRHQRL  60
RLKAATLDPL NTTSTCAPTW HHGFTKKART PRNGGKTNHS SSSTRPTSKS CWSSRINNQQ  120
PFHLVPEEGE GSDEVNSHEE NEEQLLYRVP VFDPFVADLC SPAENNTKKE SEESKSSFGS  180
HLHGFLPSEA ELAEFAADVE SLLGRGMENE CVGMEHLGLI DNNNNKVVKV EMEQEQEHMD  240
ATCSSCKLEE GDNDMMMMEI GRETAFQLSF DYDESHETEE IDKEKVNDDE DAINKKRKIL  300
LQLDYEGVIN AWGGSHKSPW TTGHKPNLDL HDCWPHTMAT GGTEFHHGYG ELMIGLGCNP  360
SSVILGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRASFAAPFP  420
LIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380396RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.J9KV2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-47AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942187.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-108COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A445BEI70.0A0A445BEI7_ARAHY; Uncharacterized protein
STRINGXP_004497095.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-106B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]