PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.J7TMC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CO-like | ||||||||
Protein Properties | Length: 379aa MW: 41756.3 Da PI: 6.9822 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.8 | 1.9e-07 | 4 | 42 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k + lfC+ ++ lC +C ++ H+ H Aradu.J7TMC 4 PCDYCDSKTAVLFCRADSAKLCISCDQHVHSAnalslkH 42 6***************************99655566666 PP | |||||||
2 | zf-B_box | 25.4 | 3e-08 | 45 | 86 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 ++C+++ ++++ C +++ lC+dC + H++ H Aradu.J7TMC 45 SQICDNCRNEPAAVRCATDNLVLCNDCDSDAHNSssvasslH 86 689*****************************8777777773 PP | |||||||
3 | CCT | 66.2 | 9.3e-23 | 327 | 370 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ Aradu.J7TMC 327 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 370 6789**************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.812 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.8E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.54E-7 | 4 | 35 | No hit | No description |
PROSITE profile | PS50119 | 9.357 | 43 | 94 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.3E-6 | 45 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.89E-6 | 47 | 76 | No hit | No description |
SMART | SM00336 | 0.68 | 48 | 84 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-16 | 327 | 369 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.842 | 327 | 369 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MLLPCDYCDS KTAVLFCRAD SAKLCISCDQ HVHSANALSL KHVRSQICDN CRNEPAAVRC 60 ATDNLVLCND CDSDAHNSSS VASSLHARHR LHGFSGCPPA LEIAAALGIE LKFNSNCNGG 120 SGNTSGFDEI KGPVVPIVKD KVYEQVLEMA RRNGTAADRN EEVEAGLCPD TPPCVQGAEE 180 KGELNTCNSF SNNKRSANRN NNNNKNNDDE LLMEQTPFTS LLMLPSDGGS VKRNDCGSEG 240 DLLWNNCNPA YQPPQNQSDQ SSSNHVMKNE ESNKKPRGGL SSESKLVEPI TYSSTNNAAY 300 MEHLVSGSEN VSTIKDKVNF EELTKNRGDA MLRYKEKKKT RRYDKHIRYE SRKARADTRK 360 RVKGRFVKAS DASDVQNEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.J7TMC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025605957.1 | 0.0 | zinc finger protein CONSTANS-LIKE 14 | ||||
TrEMBL | A0A445CTR8 | 0.0 | A0A445CTR8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004493006.1 | 1e-114 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4737 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28050.1 | 1e-33 | B-box type zinc finger protein with CCT domain |