PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.J206G

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 509aa MW: 57992 Da PI: 7.7341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.J206G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50	9.5e-16	85	177	1	89
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkktekerrtraetrtgCka...klkvkkek.dgkwevtkleleHnHel 89 kfY +YAk+vGF +++++++ k+++ +++ +C++eg+re++ ++ + r + t t Cka ++ v +++ ++ w+v++lel H+H++ Aradu.J206G 85 KFYANYAKKVGFVTKIRNTNFDktrKESKVPVNQSIYCTREGYRESRVNA---ATRANRITATRCKAtnpRMYVVLDNeNECWVVSRLELRHSHPC 177 6**********999888766444666777899********9988...8899999**9555599988888*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	85	178	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.161	285	321	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.004	296	323	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MAFSPTEEGS ITTFTNPTLG DEQFNVDELD IQEQVGYNFD EITDVVVTRK DELDDGGQLP 60 DHSGVGEEEI PVVGMSFGSL PLAQKFYANY AKKVGFVTKI RNTNFDKTRK ESKVPVNQSI 120 YCTREGYRES RVNAATRANR ITATRCKATN PRMYVVLDNE NECWVVSRLE LRHSHPCSAE 180 KAVHYHEYRE LTMHAKNVAD FSIDGDSGYL YANRRKWVPI FFKSEFWAGM RSTQRSESMH 240 AFYGGYLHCK SGLVQFVHEY DNVLGTKERK ELEDDAADSK VYHSFRVDYD PLSQKGQCEC 300 NKFESAGILC CHTLAVWSYY RVDIVPSCYV LPRWSKNVIR KHTYVKSSHD VARSDESNNL 360 FRHLCSEFYN VAQKFVACDE EAAILRAALS DAKSKLIDYR ASMRSTTAAT SQNTVPTQST 420 GGAIVHDIQG PSRVKTKGRP KGKRLGAELD KSIKKSMQKW NRKSHLDEVD LPSDNDRYGY 480 LSKRFEDSTM WNSTEGGGFM HLLNSFRHI

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MAFSPTEEGS ITTFTNPTLG DEQFNVDELD IQEQVGYNFD EITDVVVTRK DELDDGGQLP  60
DHSGVGEEEI PVVGMSFGSL PLAQKFYANY AKKVGFVTKI RNTNFDKTRK ESKVPVNQSI  120
YCTREGYRES RVNAATRANR ITATRCKATN PRMYVVLDNE NECWVVSRLE LRHSHPCSAE  180
KAVHYHEYRE LTMHAKNVAD FSIDGDSGYL YANRRKWVPI FFKSEFWAGM RSTQRSESMH  240
AFYGGYLHCK SGLVQFVHEY DNVLGTKERK ELEDDAADSK VYHSFRVDYD PLSQKGQCEC  300
NKFESAGILC CHTLAVWSYY RVDIVPSCYV LPRWSKNVIR KHTYVKSSHD VARSDESNNL  360
FRHLCSEFYN VAQKFVACDE EAAILRAALS DAKSKLIDYR ASMRSTTAAT SQNTVPTQST  420
GGAIVHDIQG PSRVKTKGRP KGKRLGAELD KSIKKSMQKW NRKSHLDEVD LPSDNDRYGY  480
LSKRFEDSTM WNSTEGGGFM HLLNSFRHI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.J206G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015965775.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445BNX4	0.0	A0A445BNX4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13637	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-18	FAR1-related sequence 5